Skip to main content
crop-pal logo
Rice
Search for another protein from :
Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • cytosol 2
  • peroxisome 3
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, mitochondrion, peroxisome
BaCelLo:cytosol
EpiLoc:cytosol
MultiLoc:peroxisome
Plant-mPloc:peroxisome
PProwler:mitochondrion
YLoc:peroxisome
 plastid: 21433289
plasma membrane: 27800704
plastid: 27992503
msms PMID: 27800704 doi
J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
msms PMID: 27992503 doi
S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.
msms PMID: 21433289 doi
S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky
Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
GSMUA_Achr2P08130_001 Banana peroxisome, plastid 79.89 51.15
Solyc11g018580.1.1 Tomato plastid 79.61 47.38
OQU82968 Sorghum endoplasmic reticulum, plasma membrane 90.63 47.2
Zm00001d053009_P009 Maize plastid 90.63 47.13
HORVU4Hr1G019780.1 Barley endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, vacuole 89.26 46.48
TraesCS4B01G110600.1 Wheat endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, vacuole 89.26 46.48
TraesCS4D01G108300.1 Wheat endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, vacuole 89.26 46.48
TraesCS4A01G207000.1 Wheat golgi 88.98 46.14
Os12t0168700-01 Rice vacuole 87.05 45.27
GSMUA_Achr1P13190_001 Banana vacuole 78.79 44.55
GSMUA_Achr8P30270_001 Banana peroxisome, plastid 83.2 43.33
GSMUA_Achr11P... Banana endoplasmic reticulum 81.27 42.32
PGSC0003DMT400002337 Potato mitochondrion 80.17 41.81
KRH53234 Soybean mitochondrion 79.61 41.64
VIT_18s0001g02810.t01 Wine grape vacuole 79.34 41.32
KRH18736 Soybean peroxisome, plastid 79.06 41.24
Bra003678.1-P Field mustard endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, vacuole 77.96 40.84
CDX79212 Canola endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, vacuole 77.96 40.84
CDX68052 Canola endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, vacuole 77.96 40.84
AT1G77590.1 Thale cress peroxisome, plastid 77.14 40.52
KRH16338 Soybean plastid, vacuole 72.18 40.49
Os05t0317200-01 Rice plastid 72.18 36.09
Os06t0158000-01 Rice plasma membrane 38.29 22.6
Os01t0681200-01 Rice plasma membrane 37.47 20.45
Os01t0655800-01 Rice plasma membrane 36.64 19.56
Os11t0147000-01 Rice peroxisome 37.74 19.32
Os12t0143900-01 Rice peroxisome 37.47 19.24
Os05t0132100-02 Rice plasma membrane 35.26 19.13
Os11t0558300-01 Rice peroxisome 34.71 19.06
Os03t0845500-01 Rice plastid 26.45 12.8
Protein Annotations
EnsemblPlants:Os11t0169800-01EnsemblPlantsGene:Os11g0169800Gene3D:3.30.300.30Gene3D:3.40.50.12780GO:GO:0003674GO:GO:0003824
GO:GO:0008150GO:GO:0008152GO:GO:0016874InterPro:AMP-dep_Synth/LigPANTHER:PTHR43272PANTHER:PTHR43272:SF29
PFAM:PF00501ProteinID:BAF27699.1ProteinID:BAT12856.1SUPFAM:SSF56801UniParc:UPI0000DD9B45UniProt:Q0IUB6
MapMan:50.6.2:::::
Description
Similar to Long-chain-fatty-acid--CoA ligase 4 (EC 6.2.1.3) (Long-chain acyl-CoA synthetase 4) (LACS 4). (Os11t0169800-01)
Coordinates
chr11:+:3374973..3377834
Molecular Weight (calculated)
39816.0 Da
IEP (calculated)
8.359
GRAVY (calculated)
-0.196
Length
363 amino acids
Sequence
(BLAST)
001: KIKKGTQGDA SALKPTLMTA VPAILDRVRD GVRKNVDAKG GAAKKLFDIA YSRRLAAING SWFGAWGLEK HLWDMLVFQK VRAILGGRIR FILSGGAPLS
101: GDTQRFINIC LGAPIGQGYG LTETCAGGTF SEYDDNSVGR VGAPLPCSYI KLIDWAEGGY LTNDSPMPRG EIVIGGPNVT KGYFKNEAKT NEVYKDDERG
201: MRWFYSGDIG RLHPDGCLEI IDRKKDIVKL QHGEYVSLGK VEAALSVCPY VDNIMIHADP FHNYCVALVV VAHSELKSWA SQQGITYSDV SDLCEKQETV
301: KEVLQCLAKA AKQARLEKFE IPAKVKLVPE PWTPESGLVT AALKLKREAI KKAYEDDLAA LYS
Best Arabidopsis Sequence Match ( AT1G77590.2 )
(BLAST)
001: MFQGCFRRNV TVVTIYSSLG EEALCHSLNE TEVTTVICGS KELKKLMDIS QQLETVKRVI CMDDEFPSDV NSNWMATSFT DVQKLGRENP VDPNFPLSAD
101: VAVIMYTSGS TGLPKGVMMT HGNVLATVSA VMTIVPDLGK RDIYMAYLPL AHILELAAES VMATIGSAIG YGSPLTLTDT SNKIKKGTKG DVTALKPTIM
201: TAVPAILDRV RDGVRKKVDA KGGLSKKLFD FAYARRLSAI NGSWFGAWGL EKLLWDVLVF RKIRAVLGGQ IRYLLSGGAP LSGDTQRFIN ICVGAPIGQG
301: YGLTETCAGG TFSEFEDTSV GRVGAPLPCS FVKLVDWAEG GYLTSDKPMP RGEIVIGGSN ITLGYFKNEE KTKEVYKVDE KGMRWFYTGD IGRFHPDGCL
401: EIIDRKKDIV KLQHGEYVSL GKVEAALSIS PYVENIMVHA DSFYSYCVAL VVASQHTVEG WASKQGIDFA NFEELCTKEQ AVKEVYASLV KAAKQSRLEK
501: FEIPAKIKLL ASPWTPESGL VTAALKLKRD VIRREFSEDL TKLYA
Arabidopsis Description
LACS9Long chain acyl-CoA synthetase 9, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9CAP8]
SUBAcon: [peroxisome]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.