CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

extracellular 3
endoplasmic reticulum 3
vacuole 4
plasma membrane 3
golgi 3
cytosol 1
plastid 2
mitochondrion 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, peroxisome, plastid, secretory
BaCelLo:	secretory
EpiLoc:	cytosol
iPSORT:	plastid
MultiLoc:	mitochondrion
Plant-mPloc:	peroxisome
Predotar:	secretory
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	vacuole

endoplasmic reticulum: 27224218
mitochondrion: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH18736	Soybean	peroxisome, plastid	81.12	80.89
Os11t0169800-01	Rice	plastid	41.64	79.61
Solyc11g018580.1.1	Tomato	plastid	68.44	77.87
PGSC0003DMT400002337	Potato	mitochondrion	75.94	75.72
VIT_18s0001g02810.t01	Wine grape	vacuole	75.94	75.61
KRH16338	Soybean	plastid, vacuole	68.88	73.88
AT1G77590.1	Thale cress	peroxisome, plastid	73.05	73.37
CDX68052	Canola	endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, vacuole	72.91	73.02
CDX79212	Canola	endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, vacuole	72.91	73.02
Bra003678.1-P	Field mustard	endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, vacuole	72.77	72.87
GSMUA_Achr11P...	Banana	endoplasmic reticulum	72.91	72.6
GSMUA_Achr8P30270_001	Banana	peroxisome, plastid	72.62	72.31
GSMUA_Achr1P13190_001	Banana	vacuole	66.86	72.27
Os12t0168700-01	Rice	vacuole	72.05	71.63
KXG23059	Sorghum	endoplasmic reticulum	71.9	71.49
TraesCS5D01G129800.1	Wheat	golgi	71.18	70.77
TraesCS5B01G118000.1	Wheat	endoplasmic reticulum	71.18	70.77
TraesCS5A01G117700.1	Wheat	endoplasmic reticulum, vacuole	71.18	70.77
Zm00001d023538_P002	Maize	plastid	71.04	70.63
GSMUA_Achr2P08130_001	Banana	peroxisome, plastid	57.49	70.37
HORVU5Hr1G036460.1	Barley	endoplasmic reticulum	70.46	70.06
Zm00001d053009_P009	Maize	plastid	70.03	69.63
OQU82968	Sorghum	endoplasmic reticulum, plasma membrane	69.74	69.44
HORVU4Hr1G019780.1	Barley	endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, vacuole	69.6	69.3
TraesCS4D01G108300.1	Wheat	endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, vacuole	69.6	69.3
TraesCS4B01G110600.1	Wheat	endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, vacuole	69.31	69.01
TraesCS4A01G207000.1	Wheat	golgi	69.6	69.0
KRG89997	Soybean	endoplasmic reticulum	60.23	62.02
KRG89995	Soybean	endoplasmic reticulum, mitochondrion	63.4	60.69
KRH17725	Soybean	peroxisome	63.11	60.41
KRH77642	Soybean	endoplasmic reticulum	31.7	32.79
KRH31765	Soybean	peroxisome	30.84	32.42
KRH48841	Soybean	peroxisome	10.23	32.42
KRH60037	Soybean	peroxisome	30.98	32.33
KRH27846	Soybean	peroxisome	30.84	32.28
KRH69184	Soybean	peroxisome	30.69	32.27
KRH35544	Soybean	endoplasmic reticulum, mitochondrion	32.28	32.18
KRG91264	Soybean	peroxisome	32.28	32.09
KRG96554	Soybean	peroxisome	30.4	31.87
KRG89197	Soybean	peroxisome	29.39	30.91
KRH68292	Soybean	endoplasmic reticulum	29.39	30.82
KRH24533	Soybean	peroxisome	29.11	30.79
KRH29538	Soybean	peroxisome	28.67	30.34
KRH49531	Soybean	peroxisome	28.82	30.3
KRH66241	Soybean	peroxisome	14.27	28.12
KRG94065	Soybean	vacuole	6.63	25.14
KRH41306	Soybean	peroxisome	9.22	25.0
KRH57847	Soybean	cytosol	3.03	23.86
KRH26020	Soybean	cytosol	3.03	23.6
KRH31560	Soybean	plastid	23.2	22.36
KRH58837	Soybean	plastid	23.05	21.83
KRH13185	Soybean	cytosol	18.16	20.16

Protein Annotations

EMBL:ACUP02003455	EnsemblPlants:KRH53234	EnsemblPlantsGene:GLYMA_06G112900	EntrezGene:100778889	Gene3D:3.40.50.12780	GO:GO:0003674
GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	InterPro:AMP-binding_CS	InterPro:AMP-dep_Synth/Lig	PANTHER:PTHR43272
PANTHER:PTHR43272:SF29	PFAM:PF00501	ProteinID:KRH53234	ProteinID:KRH53234.1	ScanProsite:PS00455	SEG:seg
SignalP:SignalP-noTM	SUPFAM:SSF56801	UniParc:UPI0002339747	UniProt:I1KA95	MapMan:50.6.2	:

Description

hypothetical protein

Coordinates

chr6:+:9174373..9179970

Molecular Weight (calculated)

76021.8 Da

IEP (calculated)

8.081

GRAVY (calculated)

-0.066

Length

694 amino acids

Sequence
(BLAST)

001: MNAYIIGLVV PLLVLLYRSR SSNKRRGIPA EAGGEPGLAL RNHRFDSPLS SAWEGVTTLA ELFERACREH QERVLLGTRA LVAREMETSP DGRTFEKLDL
101: GDYQWLTYGK VFESVSSFAS GLASLGHRRE ERVAIFADTR ERWFIALQGC FRRNVTVVTM YSSLGKEALC HSLNETEVTT VICGRKELKS LVNISGQLDS
201: VKRVICMDDD IPSDASSAQH GWKITTFSNV ERLGRENPVE ADLPLSADVA VIMYTSGSTG LPKGVMMTHG NVLATVSSVM IIVPNLGPKD VYLAYLPMAH
301: ILELVAENLI AAVGGCIGYG SPLTLTDTSN KIKKGKQGDS TALMPTVMAA VPAILDRVRD GVLKKVNSKG GLSKKLFHLA YSRRLQAING CWFGAWGLEK
401: ALWNFLVFKK VQAILGGRIR FILCGGAPLS GDTQRFINIC LGAPIGQGYG LTETCAGGSF SDFDDTSVGR VGPPVPCSYI KLIDWPEGGY STSDSPMARG
501: EIVIGGPNVT LGYFKNEEKT KESYKVDERG MRWFYTGDIG RFHKDGCLEI IDRKKDIVKL QHGEYVSLGK VEAAVSASPF VDNIMLHADP FHSYCVALVV
601: VSHSALEQWA SKQGIAYSDL SELCSKEETV KEVHASLVKE AKTARLEKFE IPAKVKLLSE PWTPESGLVT AALKLKREIL RKTFQADLSE LYAS

Best Arabidopsis Sequence Match ( AT1G77590.1 )
(BLAST)

001: MIPYAAGVIV PLALTFLVQK SKKEKKRGVV VDVGGEPGYA IRNHRFTEPV SSHWEHISTL PELFEISCNA HSDRVFLGTR KLISREIETS EDGKTFEKLH
101: LGDYEWLTFG KTLEAVCDFA SGLVQIGHKT EERVAIFADT REEWFISLQG CFRRNVTVVT IYSSLGEEAL CHSLNETEVT TVICGSKELK KLMDISQQLE
201: TVKRVICMDD EFPSDVNSNW MATSFTDVQK LGRENPVDPN FPLSADVAVI MYTSGSTGLP KGVMMTHGNV LATVSAVMTI VPDLGKRDIY MAYLPLAHIL
301: ELAAESVMAT IGSAIGYGSP LTLTDTSNKI KKGTKGDVTA LKPTIMTAVP AILDRVRDGV RKKVDAKGGL SKKLFDFAYA RRLSAINGSW FGAWGLEKLL
401: WDVLVFRKIR AVLGGQIRYL LSGGAPLSGD TQRFINICVG APIGQGYGLT ETCAGGTFSE FEDTSVGRVG APLPCSFVKL VDWAEGGYLT SDKPMPRGEI
501: VIGGSNITLG YFKNEEKTKE VYKVDEKGMR WFYTGDIGRF HPDGCLEIID RKKDIVKLQH GEYVSLGKVE AALSISPYVE NIMVHADSFY SYCVALVVAS
601: QHTVEGWASK QGIDFANFEE LCTKEQAVKE VYASLVKAAK QSRLEKFEIP AKIKLLASPW TPESGLVTAA LKLKRDVIRR EFSEDLTKLY A

Arabidopsis Description

LACS9Long chain acyl-CoA synthetase 9, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9CAP8]
SUBAcon: [peroxisome,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.