CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

cytosol 2
peroxisome 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, peroxisome
BaCelLo:	cytosol
MultiLoc:	peroxisome
Plant-mPloc:	peroxisome
PProwler:	peroxisome
WoLF PSORT:	cytosol
YLoc:	peroxisome

endoplasmic reticulum: 27224218

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG96554	Soybean	peroxisome	95.77	95.77
KRH69184	Soybean	peroxisome	82.48	82.73
KRH31765	Soybean	peroxisome	82.02	82.27
VIT_07s0005g01790.t01	Wine grape	peroxisome	75.08	75.08
PGSC0003DMT400023374	Potato	peroxisome	71.45	71.56
KRH66241	Soybean	peroxisome	37.76	71.02
AT2G47240.2	Thale cress	peroxisome	69.18	69.39
CDY51419	Canola	peroxisome	68.73	68.94
Bra021392.1-P	Field mustard	peroxisome	68.73	68.94
CDY27501	Canola	peroxisome	68.28	68.48
CDY72011	Canola	peroxisome	21.45	67.3
CDX80092	Canola	mitochondrion, peroxisome	29.46	66.55
GSMUA_Achr8P10780_001	Banana	peroxisome	66.62	66.42
CDY69216	Canola	peroxisome	41.24	66.26
CDY68722	Canola	peroxisome	28.4	66.2
Bra004467.1-P	Field mustard	peroxisome	69.03	65.57
TraesCS1B01G093600.1	Wheat	peroxisome	65.71	64.93
Os05t0132100-02	Rice	plasma membrane	65.41	64.72
TraesCS1D01G077600.1	Wheat	golgi	65.11	64.33
TraesCS1A01G075000.1	Wheat	golgi	64.95	64.18
CDX80093	Canola	peroxisome	41.54	63.81
CDY37793	Canola	peroxisome	41.54	63.81
Zm00001d024723_P001	Maize	peroxisome	64.2	63.43
KXG21217	Sorghum	peroxisome	64.05	63.28
CDY71490	Canola	extracellular, peroxisome	14.35	61.69
CDX95713	Canola	peroxisome	61.03	58.98
Zm00001d010943_P001	Maize	peroxisome	11.78	55.32
HORVU1Hr1G016200.16	Barley	peroxisome	65.11	55.26
KRH48841	Soybean	peroxisome	16.77	50.68
KRH27846	Soybean	peroxisome	50.45	50.38
KRH60037	Soybean	peroxisome	50.6	50.38
KRH77642	Soybean	endoplasmic reticulum	49.55	48.88
KRG89197	Soybean	peroxisome	46.98	47.12
KRH24533	Soybean	peroxisome	46.37	46.8
KRH49531	Soybean	peroxisome	46.53	46.67
KRH29538	Soybean	peroxisome	46.22	46.65
KRH41306	Soybean	peroxisome	15.86	41.02
KRH57847	Soybean	cytosol	5.29	39.77
KRH26020	Soybean	cytosol	5.29	39.33
KRG94065	Soybean	vacuole	10.73	38.8
KRH35544	Soybean	endoplasmic reticulum, mitochondrion	36.56	34.77
KRG91264	Soybean	peroxisome	36.56	34.67
KRH18736	Soybean	peroxisome, plastid	31.27	29.74
KRH53234	Soybean	mitochondrion	30.82	29.39
KRG89997	Soybean	endoplasmic reticulum	29.31	28.78
KRH16338	Soybean	plastid, vacuole	27.49	28.13
KRH17725	Soybean	peroxisome	30.06	27.45
KRG89995	Soybean	endoplasmic reticulum, mitochondrion	29.91	27.31
KRH58837	Soybean	plastid	25.23	22.78
KRH31560	Soybean	plastid	24.77	22.78
KRH13185	Soybean	cytosol	20.69	21.92

Protein Annotations

EMBL:ACUP02002106	EnsemblPlants:KRH68292	EnsemblPlantsGene:GLYMA_03G221400	EntrezGene:100807687	Gene3D:3.40.50.12780	GO:GO:0003674
GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	InterPro:AMP-binding_CS	InterPro:AMP-dep_Synth/Lig	PANTHER:PTHR43272
PANTHER:PTHR43272:SF6	PFAM:PF00501	ProteinID:KRH68292	ProteinID:KRH68292.1	ProteinID:KRH68293.1	ScanProsite:PS00455
SUPFAM:SSF56801	UniParc:UPI0002339D65	UniProt:I1JQU3	MapMan:50.6.2	:	:

Description

hypothetical protein

Coordinates

chr3:-:42444108..42450561

Molecular Weight (calculated)

74414.1 Da

IEP (calculated)

7.195

GRAVY (calculated)

-0.194

Length

662 amino acids

Sequence
(BLAST)

001: MKSFAAKVEE GREGINGELS IGPVYRNLLS KNQFPPLDPD LSTAWDIFSM AVKKYPKNRM LGWREFVDAK IGPYVWKTYK EVYDEVLHIG SALRASGAEL
101: GSKIGIYGAN CPQWIVAMEA CCAHSLVCVP LYDTLGPGAV NFIIDHGELD FVFVQDRKVI HLLNPDCKSA QRLKAMVSFT SLTEEEKDKA ISIGIKPYSW
201: QEFLHMGKEN PSNISAPQPN NICTIMYTSG TSGDPKGVVL THENIATFVR GMDLFMEQFE DKMTVEDVYL SFLPLAHILD RTIEEYFFHK GASVGYYHGD
301: LNALRDDLME LKPTLFAGVP RVFEKVHEGI KKAVEELNPV RRRVFGMLYK HKLGWMNKGY KHCNASPLAD LLAFRKVKAR LGGRVRLIIS GGAPLSSEVE
401: EFLRVTSCAF VCQGYGLTET CGSTTLAYPD EMCMLGTVGP VSVYNEMRLE EVPEMGYNPL GSPSCGEICL RGKTVFTGYY KNPELTREAI KDGWFHTGDI
501: AEVQPNGVVK IIDRKKNLIK LSQGEYIALE HLENVYGITP IVEDVWVYGN SFKSALVAVV VPNEEITKKW AFSNGHIAPF SKLCSLDQLK KHVLSELKVT
601: AERNKLKGFE YIKGVILDPQ PFDMERDLVT STMKKRRNNM LKYYQVEIDD VYRSLSGDKA KI

Best Arabidopsis Sequence Match ( AT2G47240.3 )
(BLAST)

001: MKSFAAKVEE GVKGIDGKPS VGPVYRNLLS EKGFPPIDSE ITTAWDIFSK SVEKFPDNNM LGWRRIVDEK VGPYMWKTYK EVYEEVLQIG SALRAAGAEP
101: GSRVGIYGVN CPQWIIAMEA CAAHTLICVP LYDTLGSGAV DYIVEHAEID FVFVQDTKIK GLLEPDCKCA KRLKAIVSFT NVSDELSHKA SEIGVKTYSW
201: IDFLHMGREK PEDTNPPKAF NICTIMYTSG TSGDPKGVVL THQAVATFVV GMDLYMDQFE DKMTHDDVYL SFLPLAHILD RMNEEYFFRK GASVGYYHGN
301: LNVLRDDIQE LKPTYLAGVP RVFERIHEGI QKALQELNPR RRFIFNALYK HKLAWLNRGY SHSKASPMAD FIAFRKIRDK LGGRIRLLVS GGAPLSPEIE
401: EFLRVTCCCF VVQGYGLTET LGGTALGFPD EMCMLGTVGI PAVYNEIRLE EVSEMGYDPL GENPAGEICI RGQCMFSGYY KNPELTEEVM KDGWFHTGDI
501: GEILPNGVLK IIDRKKNLIK LSQGEYVALE HLENIFGQNS VVQDIWVYGD SFKSMLVAVV VPNPETVNRW AKDLGFTKPF EELCSFPELK EHIISELKST
601: AEKNKLRKFE YIKAVTVETK PFDVERDLVT ATLKNRRNNL LKYYQVQIDE MYRKLASKKI

Arabidopsis Description

LACS1Long chain acyl-CoA synthetase 1 [Source:UniProtKB/Swiss-Prot;Acc:O22898]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.