CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

cytosol 1
mitochondrion 2
peroxisome 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	peroxisome
Any Predictor:	cytosol, peroxisome, plastid
BaCelLo:	cytosol
iPSORT:	mitochondrion
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY68722	Canola	peroxisome	35.77	86.27
CDX80092	Canola	mitochondrion, peroxisome	36.79	86.01
CDY51419	Canola	peroxisome	79.42	82.42
CDY27501	Canola	peroxisome	78.98	81.97
AT2G47240.2	Thale cress	peroxisome	78.83	81.82
CDY72011	Canola	peroxisome	24.96	81.04
CDY69216	Canola	peroxisome	48.47	80.58
CDY37793	Canola	peroxisome	48.76	77.49
CDX80093	Canola	peroxisome	48.76	77.49
CDY71490	Canola	extracellular, peroxisome	16.5	73.38
KRH68292	Soybean	endoplasmic reticulum	58.98	61.03
KRG96554	Soybean	peroxisome	58.83	60.88
KRH69184	Soybean	peroxisome	57.52	59.7
KRH31765	Soybean	peroxisome	56.93	59.09
VIT_07s0005g01790.t01	Wine grape	peroxisome	56.79	58.76
PGSC0003DMT400023374	Potato	peroxisome	55.04	57.03
GSMUA_Achr8P10780_001	Banana	peroxisome	54.89	56.63
KXG21217	Sorghum	peroxisome	54.74	55.97
TraesCS1B01G093600.1	Wheat	peroxisome	54.16	55.37
Zm00001d024723_P001	Maize	peroxisome	54.01	55.22
TraesCS1A01G075000.1	Wheat	golgi	54.01	55.22
TraesCS1D01G077600.1	Wheat	golgi	53.72	54.93
Os05t0132100-02	Rice	plasma membrane	53.58	54.86
Zm00001d010943_P001	Maize	peroxisome	10.37	50.35
HORVU1Hr1G016200.16	Barley	peroxisome	54.16	47.56
CDY47618	Canola	peroxisome	43.21	44.38
CDY03515	Canola	peroxisome	43.07	44.23
CDX86825	Canola	peroxisome	42.92	44.14
KRH66241	Soybean	peroxisome	22.63	44.03
CDX94232	Canola	peroxisome	41.31	42.81
CDY25270	Canola	peroxisome	41.02	42.64
CDY59237	Canola	peroxisome	40.44	41.59
CDY29350	Canola	peroxisome	40.29	41.44
CDY40856	Canola	peroxisome	42.92	40.11
CDY46530	Canola	peroxisome	43.21	37.66
CDX92843	Canola	peroxisome	11.09	35.51
CDY27725	Canola	plastid	32.99	32.9
CDY05217	Canola	plastid	32.99	32.9
CDX74115	Canola	plastid	32.85	32.33
CDY49993	Canola	mitochondrion	32.85	32.33
CDX86151	Canola	peroxisome	32.12	31.47
CDX80638	Canola	peroxisome	31.97	31.33
CDY64879	Canola	peroxisome	43.65	31.15
CDY65251	Canola	peroxisome	10.51	30.77
CDX68052	Canola	endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, vacuole	28.47	28.14
CDX79212	Canola	endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, vacuole	28.47	28.14
CDY15082	Canola	peroxisome	27.88	26.68
CDY66248	Canola	peroxisome	27.74	26.35
CDY67321	Canola	plastid	22.04	21.03
CDY53212	Canola	plastid	21.75	19.92
CDY01190	Canola	plastid	20.44	19.47
CDY12731	Canola	plastid	20.0	18.9

Protein Annotations

EnsemblPlants:CDX95713	EnsemblPlantsGene:GSBRNA2T00101611001	Gene3D:3.40.50.12780	GO:A0A078E8K0	GO:GO:0003674	GO:GO:0003824
GO:GO:0008150	GO:GO:0008152	InterPro:AMP-dep_Synth/Lig	PANTHER:PTHR43272	PANTHER:PTHR43272:SF6	PFAM:PF00501
ProteinID:CDX95713	ProteinID:CDX95713.1	SEG:seg	SUPFAM:SSF56801	TMHMM:TMhelix	UniParc:UPI0004EEFB5F
MapMan:50.6.2	:	:	:	:	:

Description

BnaC03g25940D

Coordinates

chrLK031890:+:887109..893218

Molecular Weight (calculated)

77819.9 Da

IEP (calculated)

8.394

GRAVY (calculated)

-0.081

Length

685 amino acids

Sequence
(BLAST)

001: MKFFAAKLEE GVKGGNGKPS VGPVYRNLLS EKGFPPMDSD ITTAWDVFSK SVEKFPYNKV LGWRRIVDEK VGPYMWKTYK EAYGEVLQIG SAIRALGAEP
101: GCRVGIYGVN CPQWIIAMEA CAAHTLICVP LYDTLGSGAV DYIVDHAEID FVFVQDSKIK GLLEPNCKCA KRLKAIVSFV NVSEEDSCRP DDFQHLRRLR
201: RFIWAIFVKM ASIFLFGHKG LGIGLGLKSS CGLVLAKIPL LFIILLHMKK PKKKYIINYI FNLNILDVNF QIFSLLLVTE RKLSMTHEDV YLSFLPLAHI
301: LDRMNEEYFF RKGASVGYYH GDLNVLRDDI QELKPTYLAG VPRVFERIHE GIQKALQELN PRRRFIFNAL YQHKLSWLNR GYSHSKASPM ADFIAFRKIR
401: DKLGGRIRLL VSGGAPLSCE IEEFLRVTCC CFVVQGYGLT ETLGGTALGF PDEMCMLGTV GIPAVYNEIR LEEVAEMGYD PLGEIQAGEI CIRGTCLFSG
501: YYKNPELTQE VMKNGWFHTG DIGEIHPNRV LKIIDRKKNL IKLSQGEYVA LENLENIYGQ NSVVQDIWVY GDSFKSMLVA VIVPNPETVN RWAKDLGFTK
601: PFEELCSLSE LHDEHIILEL KSTAEKNKLR KFEYIKAVTV ETKPFDVERD LVTATLKNRR NNLLKYYQSA NVPLYRSYET STIKA

Best Arabidopsis Sequence Match ( AT2G47240.3 )
(BLAST)

001: MKSFAAKVEE GVKGIDGKPS VGPVYRNLLS EKGFPPIDSE ITTAWDIFSK SVEKFPDNNM LGWRRIVDEK VGPYMWKTYK EVYEEVLQIG SALRAAGAEP
101: GSRVGIYGVN CPQWIIAMEA CAAHTLICVP LYDTLGSGAV DYIVEHAEID FVFVQDTKIK GLLEPDCKCA KRLKAIVSFT NVSDELSHKA SEIGVKTYSW
201: IDFLHMGREK PEDTNPPKAF NICTIMYTSG TSGDPKGVVL THQAVATFVV GMDLYMDQFE DKMTHDDVYL SFLPLAHILD RMNEEYFFRK GASVGYYHGN
301: LNVLRDDIQE LKPTYLAGVP RVFERIHEGI QKALQELNPR RRFIFNALYK HKLAWLNRGY SHSKASPMAD FIAFRKIRDK LGGRIRLLVS GGAPLSPEIE
401: EFLRVTCCCF VVQGYGLTET LGGTALGFPD EMCMLGTVGI PAVYNEIRLE EVSEMGYDPL GENPAGEICI RGQCMFSGYY KNPELTEEVM KDGWFHTGDI
501: GEILPNGVLK IIDRKKNLIK LSQGEYVALE HLENIFGQNS VVQDIWVYGD SFKSMLVAVV VPNPETVNRW AKDLGFTKPF EELCSFPELK EHIISELKST
601: AEKNKLRKFE YIKAVTVETK PFDVERDLVT ATLKNRRNNL LKYYQVQIDE MYRKLASKKI

Arabidopsis Description

LACS1Long chain acyl-CoA synthetase 1 [Source:UniProtKB/Swiss-Prot;Acc:O22898]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.