CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

cytosol 2
peroxisome 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	peroxisome
Any Predictor:	cytosol, peroxisome
BaCelLo:	cytosol
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY25270	Canola	peroxisome	97.73	98.03
Bra033159.1-P	Field mustard	peroxisome	86.54	94.7
CDX86825	Canola	peroxisome	88.8	88.14
AT4G11030.1	Thale cress	peroxisome	86.54	85.89
CDY40856	Canola	peroxisome	88.8	80.08
CDY47618	Canola	peroxisome	77.31	76.61
CDY03515	Canola	peroxisome	77.16	76.46
Solyc08g082280.2.1	Tomato	nucleus, plastid	70.05	70.36
Solyc08g008310.2.1	Tomato	peroxisome	63.54	70.35
VIT_02s0025g01410.t01	Wine grape	peroxisome	70.35	70.24
KRH77642	Soybean	endoplasmic reticulum	68.99	67.96
KRH27846	Soybean	peroxisome	68.08	67.87
GSMUA_Achr3P32060_001	Banana	peroxisome	66.72	67.33
PGSC0003DMT400014954	Potato	cytosol	11.8	67.24
Zm00001d044016_P001	Maize	mitochondrion	65.66	66.26
TraesCS3B01G266100.1	Wheat	golgi	65.51	65.81
HORVU3Hr1G059140.1	Barley	peroxisome	65.51	65.81
TraesCS3D01G237900.1	Wheat	peroxisome	65.51	65.81
GSMUA_Achr6P14370_001	Banana	peroxisome	65.2	65.8
TraesCS5B01G147300.1	Wheat	peroxisome	65.66	65.56
Os01t0681200-01	Rice	plasma membrane	65.81	65.41
TraesCS5A01G148700.1	Wheat	peroxisome	65.96	65.37
KRH60037	Soybean	peroxisome	65.66	65.26
TraesCS5D01G144200.2	Wheat	peroxisome	65.81	65.22
KXG27302	Sorghum	cytosol	5.3	64.81
Zm00001d043851_P001	Maize	mitochondrion	64.75	64.46
TraesCS3A01G237700.3	Wheat	peroxisome	65.05	64.08
HORVU5Hr1G046950.26	Barley	peroxisome	65.66	63.73
Os06t0158000-01	Rice	plasma membrane	57.03	61.3
Os01t0655800-01	Rice	plasma membrane	62.03	60.29
TraesCS7D01G110700.1	Wheat	peroxisome	59.0	60.0
TraesCS7B01G012700.1	Wheat	peroxisome	58.4	59.38
Zm00001d045295_P001	Maize	extracellular	60.21	58.96
TraesCS7A01G115900.1	Wheat	peroxisome	56.13	58.8
KRG94065	Soybean	vacuole	16.04	57.92
CDY46530	Canola	peroxisome	67.17	56.49
KRH41306	Soybean	peroxisome	21.33	55.08
HORVU7Hr1G024350.1	Barley	endoplasmic reticulum, vacuole	57.94	53.64
CDY68722	Canola	peroxisome	22.84	53.17
CDX80092	Canola	mitochondrion, peroxisome	23.15	52.22
CDY59237	Canola	peroxisome	50.08	49.7
CDY29350	Canola	peroxisome	49.62	49.25
CDY72011	Canola	peroxisome	15.43	48.34
CDY69216	Canola	peroxisome	29.2	46.84
CDY64879	Canola	peroxisome	67.32	46.35
CDY71490	Canola	extracellular, peroxisome	10.74	46.1
CDY51419	Canola	peroxisome	45.39	45.45
CDY27501	Canola	peroxisome	45.08	45.15
CDY37793	Canola	peroxisome	29.35	45.01
CDX80093	Canola	peroxisome	29.35	45.01
CDX95713	Canola	peroxisome	42.81	41.31
CDX92843	Canola	peroxisome	12.41	38.32
CDX80638	Canola	peroxisome	36.16	34.19
CDY05217	Canola	plastid	35.4	34.06
CDX74115	Canola	plastid	35.85	34.05
CDX86151	Canola	peroxisome	36.01	34.05
CDY27725	Canola	plastid	35.25	33.92
CDY49993	Canola	mitochondrion	35.7	33.91
CDY65251	Canola	peroxisome	10.59	29.91
CDX68052	Canola	endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, vacuole	29.8	28.43
CDX79212	Canola	endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, vacuole	29.65	28.28
CDY66248	Canola	peroxisome	30.26	27.74
CDY15082	Canola	peroxisome	29.95	27.65
CDY67321	Canola	plastid	19.97	18.38
CDY12731	Canola	plastid	19.67	17.93
CDY01190	Canola	plastid	19.21	17.66
CDY53212	Canola	plastid	19.82	17.51

Protein Annotations

EnsemblPlants:CDX94232	EnsemblPlantsGene:GSBRNA2T00157197001	Gene3D:3.40.50.12780	GO:A0A078DZ79	GO:GO:0003674	GO:GO:0003824
GO:GO:0008150	GO:GO:0008152	InterPro:AMP-dep_Synth/Lig	PANTHER:PTHR43272	PANTHER:PTHR43272:SF9	PFAM:PF00501
ProteinID:CDX94232	ProteinID:CDX94232.1	SUPFAM:SSF56801	UniParc:UPI0004EE20DC	MapMan:50.6.2	:

Description

BnaC02g28920D

Coordinates

chrLK031880:-:116612..120657

Molecular Weight (calculated)

73456.5 Da

IEP (calculated)

6.262

GRAVY (calculated)

-0.105

Length

661 amino acids

Sequence
(BLAST)

001: MTSEKKFIYE VEAAKEATDG KPSIGPVYRS TLAKNGFPDP IDGIHSCWDI FRTAVEKYPN NRMLGQREIV NEKAGKYEWK TYKEVYDIVI KLGNSLRSCG
101: FEEGGKCGIY GANCPEWIIS MEACNAHGLY CVPLYDTLGA GAVEFIISHA EVAIAFVEEN KIPELFKTCP NSTKYMKTVV SFGGVKPEQK EEAEKLGLVI
201: HAWDEFLKAK VTNMSFQLKR KVTYARLCIL AEPPGVLISN ESIVTITTGV MHFLQSVNES LTEKDVYISY LPLAHVFDLA IEECIIQVGG SIGFWRGDVK
301: LLIEDLGELK PSIFCAVPRV LDRVYTGLQQ KLSVGGFFKK KVFDVAFSYK FGNMKKGQSH VAAAPFCDKL VFNKVKQGLG GNVRIILSGA APLASHIESF
401: LRVVACCHVL QGYGLTESCA GTFVTFPDDL DMLGTVGPPV PNVDIRLESV PDMEYDALGS TPRGEICIRG KTLFSGYHKR EDLTKEVLID GWFHTGDVGE
501: WQPDGSMKII DRKKNIFKLA QGEYVAVESL ENVYGQVDAI DSVWVYGNSF ESFLIAVVNP TQRTLESWAV ENGVDGDFNS ICQNAKAKAF ILGELVKAGR
601: ERKLKGFEII RAVHLEPVAF DIERDLLTPT YKKKRPQLLK YYQNVIDEIY NAAKEGQGSG Q

Best Arabidopsis Sequence Match ( AT4G11030.1 )
(BLAST)

001: MTSQKRFIFE VEAAKEATDG NPSVGPVYRS TFAQNGFPNP IDGIQSCWDI FRTAVEKYPN NRMLGRREIS NGKAGKYVWK TYKEVYDIVI KLGNSLRSCG
101: IKEGEKCGIY GINCCEWIIS MEACNAHGLY CVPLYDTLGA GAVEFIISHA EVSIAFVEEK KIPELFKTCP NSTKYMKTVV SFGGVKPEQK EEAEKLGLVI
201: HSWDEFLKLG EGKQYELPIK KPSDICTIMY TSGTTGDPKG VMISNESIVT ITTGVMHFLG NVNASLSEKD VYISYLPLAH VFDRAIEECI IQVGGSIGFW
301: RGDVKLLIED LGELKPSIFC AVPRVLDRVY TGLQQKLSGG GFFKKKVFDV AFSYKFGNMK KGQSHVAASP FCDKLVFNKV KQGLGGNVRI ILSGAAPLAS
401: HIESFLRVVA CCNVLQGYGL TESCAGTFAT FPDELDMLGT VGPPVPNVDI RLESVPEMNY DALGSTPRGE ICIRGKTLFS GYYKREDLTK EVFIDGWLHT
501: GDVGEWQPNG SMKIIDRKKN IFKLAQGEYV AVENLENVYS QVEVIESIWV YGNSFESFLV AIANPAQQTL ERWAVENGVN GDFNSICQNA KAKAFILGEL
601: VKTAKENKLK GFEIIKDVHL EPVAFDMERD LLTPTYKKKR PQLLKYYQNV IHEMYKTTKE SLASGQ

Arabidopsis Description

LACS5Long chain acyl-CoA synthetase 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9T009]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.