Factsheet for TraesCS3A01G237700.3

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

peroxisome 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	peroxisome
Any Predictor:	cytosol, mitochondrion, peroxisome
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G237900.1	Wheat	peroxisome	95.98	97.87
TraesCS3B01G266100.1	Wheat	golgi	95.68	97.57
HORVU3Hr1G059140.1	Barley	peroxisome	95.08	96.96
EES01192	Sorghum	peroxisome	86.44	88.55
Zm00001d044016_P001	Maize	mitochondrion	85.54	87.63
Os01t0655800-01	Rice	plasma membrane	81.07	80.0
VIT_02s0025g01410.t01	Wine grape	peroxisome	74.66	75.68
GSMUA_Achr6P14370_001	Banana	peroxisome	70.34	72.06
KRH77642	Soybean	endoplasmic reticulum	71.98	71.98
KRH27846	Soybean	peroxisome	71.09	71.95
Bra013735.1-P	Field mustard	peroxisome	66.47	71.59
TraesCS5A01G148700.1	Wheat	peroxisome	70.94	71.36
CDY47618	Canola	peroxisome	70.79	71.21
CDY03515	Canola	peroxisome	70.64	71.06
AT4G23850.1	Thale cress	peroxisome	68.7	69.22
Bra033159.1-P	Field mustard	peroxisome	61.55	68.38
CDX86825	Canola	peroxisome	67.21	67.72
Bra035259.1-P	Field mustard	peroxisome	67.21	67.72
AT1G64400.1	Thale cress	cytosol, peroxisome, plastid	66.77	67.37
KRH60037	Soybean	peroxisome	66.77	67.37
AT4G11030.1	Thale cress	peroxisome	65.57	66.07
CDY25270	Canola	peroxisome	63.93	65.1
CDX94232	Canola	peroxisome	64.08	65.05
TraesCS7A01G115900.1	Wheat	peroxisome	61.1	64.98
CDY40856	Canola	peroxisome	67.21	61.53
KRH41306	Soybean	peroxisome	22.95	60.16
CDY46530	Canola	peroxisome	66.92	57.12
TraesCS5A01G411500.2	Wheat	golgi	55.59	56.17
KRG94065	Soybean	vacuole	15.05	55.19
Bra027700.1-P	Field mustard	peroxisome	67.36	54.72
CDY64879	Canola	peroxisome	67.36	47.08
TraesCS1A01G075000.1	Wheat	golgi	45.9	45.97
TraesCS4A01G184900.2	Wheat	peroxisome	38.9	37.5
TraesCS5A01G133200.2	Wheat	peroxisome	38.75	37.04
TraesCS4A01G207000.1	Wheat	golgi	32.34	31.0
TraesCS5A01G169600.1	Wheat	golgi	33.08	30.49
TraesCS5A01G117700.1	Wheat	endoplasmic reticulum, vacuole	31.45	30.23
TraesCS4A01G336500.2	Wheat	mitochondrion, plastid	22.8	20.59
TraesCS4A01G336400.4	Wheat	plastid	22.5	20.57

Protein Annotations

EnsemblPlants:TraesCS3A01G237700.3	EnsemblPlantsGene:TraesCS3A01G237700	Gene3D:3.40.50.12780	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150
GO:GO:0008152	InterPro:AMP-binding_CS	InterPro:AMP-dep_Synth/Lig	PANTHER:PTHR43272	PANTHER:PTHR43272:SF9	PFAM:PF00501
ScanProsite:PS00455	SUPFAM:SSF56801	TIGR:cd05927	MapMan:50.6.2	:	:

Description

No Description!

Coordinates

chr3A:+:444455745..444464093

Molecular Weight (calculated)

74397.3 Da

IEP (calculated)

6.132

GRAVY (calculated)

-0.159

Length

671 amino acids

Sequence
(BLAST)

001: MAEMQHVVKV EEGRPAADGR PSVGPTYRSA FARDGFPAPV DGLDSCYDIF RMAVEKYPNN RMLGHRETVD GKAGAYVWRT YKEVFDIANK IGNSIRSCGL
101: TKGSRCGIYG ANSPEWIITM EACNAHGVYC VPLYDTLGAG AIEFILCHAE VEIAFAEEKK VAELLKTFPK STEFLKTIVS FGKVTQEQKE EVSKYGLSIY
201: SWDEFISLAG DQEFDLPVNQ RTDTCTIMYT SGTTGDPKGV LISNASIICL IAGVDRLLNS VNERLEETDV YMSYLPLAHI FDRVVEELFM FHGASIGFWR
301: GDVKLLVEDI GTLKPTILCA VPRVLDRIFS GLQAKISAGG FIKSTMFNLA YKFKQFRMMR GAKHNEAAAI CDKVVFSKVK EGLGGNVRVI LSGAAPLATH
401: VEEYLRVVTC AHVLQGYGLT ETCAGSFVSL PNQMSMIGTV GPPVPNIDAR LESVPDMNYD ALASTPRGEI CIKGETLFSG YYRREDLTEE VLVDGWFHTG
501: DIGEWQPDGS MKIIDRKKNI FKLSQGEYVA VENLENIYGV VSAIDSIWVY GNSFESFLVA VVNPNKEALE SWAEGNGTSG DFEALCENPK AKEYILGELS
601: KTGKEKKLKG FEFIRAVHLD PVPFDMERDL ITPTYKRKRP QLLKYYQAVA RTPCGRNRQH GSSLSGRPMR A

Best Arabidopsis Sequence Match ( AT4G23850.1 )
(BLAST)

001: MSQQKKYIFQ VEEGKEGSDG RPSVGPVYRS IFAKDGFPDP IEGMDSCWDV FRMSVEKYPN NPMLGRREIV DGKPGKYVWQ TYQEVYDIVM KLGNSLRSVG
101: VKDEAKCGIY GANSPEWIIS MEACNAHGLY CVPLYDTLGA DAVEFIISHS EVSIVFVEEK KISELFKTCP NSTEYMKTVV SFGGVSREQK EEAETFGLVI
201: YAWDEFLKLG EGKQYDLPIK KKSDICTIMY TSGTTGDPKG VMISNESIVT LIAGVIRLLK SANEALTVKD VYLSYLPLAH IFDRVIEECF IQHGAAIGFW
301: RGDVKLLIED LAELKPTIFC AVPRVLDRVY SGLQKKLSDG GFLKKFIFDS AFSYKFGYMK KGQSHVEASP LFDKLVFSKV KQGLGGNVRI ILSGAAPLAS
401: HVESFLRVVA CCHVLQGYGL TESCAGTFVS LPDELGMLGT VGPPVPNVDI RLESVPEMEY DALASTARGE ICIRGKTLFS GYYKREDLTK EVLIDGWLHT
501: GDVGEWQPDG SMKIIDRKKN IFKLSQGEYV AVENIENIYG EVQAVDSVWV YGNSFESFLI AIANPNQHIL ERWAAENGVS GDYDALCQNE KAKEFILGEL
601: VKMAKEKKMK GFEIIKAIHL DPVPFDMERD LLTPTFKKKR PQLLKYYQSV IDEMYKTINA KFASRG

Arabidopsis Description

LACS4Long chain acyl-CoA synthetase 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9T0A0]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.