Factsheet for Zm00001d044016_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

peroxisome 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, peroxisome
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	peroxisome

mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES01192	Sorghum	peroxisome	95.11	95.11
HORVU3Hr1G059140.1	Barley	peroxisome	89.47	89.06
TraesCS3B01G266100.1	Wheat	golgi	89.16	88.75
TraesCS3D01G237900.1	Wheat	peroxisome	89.16	88.75
TraesCS3A01G237700.3	Wheat	peroxisome	87.63	85.54
Os01t0655800-01	Rice	plasma membrane	84.12	81.03
VIT_02s0025g01410.t01	Wine grape	peroxisome	77.1	76.28
GSMUA_Achr6P14370_001	Banana	peroxisome	72.67	72.67
KRH27846	Soybean	peroxisome	72.67	71.79
Bra013735.1-P	Field mustard	peroxisome	67.79	71.27
KRH77642	Soybean	endoplasmic reticulum	72.67	70.94
Zm00001d043851_P001	Maize	mitochondrion	71.91	70.93
CDY47618	Canola	peroxisome	71.76	70.46
CDY03515	Canola	peroxisome	71.6	70.31
Bra033159.1-P	Field mustard	peroxisome	63.97	69.37
AT4G23850.1	Thale cress	peroxisome	70.38	69.22
CDX86825	Canola	peroxisome	70.08	68.92
Bra035259.1-P	Field mustard	peroxisome	70.08	68.92
KRH60037	Soybean	peroxisome	69.62	68.57
AT1G64400.1	Thale cress	cytosol, peroxisome, plastid	68.24	67.22
AT4G11030.1	Thale cress	peroxisome	68.09	66.97
CDY25270	Canola	peroxisome	66.11	65.71
CDX94232	Canola	peroxisome	66.26	65.66
Zm00001d045295_P001	Maize	extracellular	67.48	65.48
CDY40856	Canola	peroxisome	69.92	62.48
KRH41306	Soybean	peroxisome	23.82	60.94
CDY46530	Canola	peroxisome	69.01	57.51
Zm00001d053127_P005	Maize	mitochondrion	57.4	56.63
KRG94065	Soybean	vacuole	15.57	55.74
Bra027700.1-P	Field mustard	peroxisome	69.47	55.08
Zm00001d010943_P001	Maize	peroxisome	10.53	48.94
Zm00001d024723_P001	Maize	peroxisome	49.01	47.91
CDY64879	Canola	peroxisome	69.47	47.4
Zm00001d023238_P002	Maize	plasma membrane	40.92	38.78
Zm00001d052485_P001	Maize	mitochondrion, peroxisome	40.76	38.36
Zm00001d023538_P002	Maize	plastid	33.28	31.23
Zm00001d053009_P009	Maize	plastid	33.13	31.09
Zm00001d005019_P004	Maize	plasma membrane	32.67	29.48
Zm00001d052399_P007	Maize	peroxisome	31.91	28.79
Zm00001d034832_P006	Maize	plastid	21.68	17.79

Protein Annotations

EnsemblPlants:Zm00001d044016_P001	EnsemblPlants:Zm00001d044016_T001	EnsemblPlantsGene:Zm00001d044016	EntrezGene:103632349	Gene3D:3.40.50.12780	GO:GO:0003674
GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	InterPro:AMP-binding_CS	InterPro:AMP-dep_Synth/Lig	PANTHER:PTHR43272
PANTHER:PTHR43272:SF9	PFAM:PF00501	ProteinID:ONM39682.1	ScanProsite:PS00455	SUPFAM:SSF56801	UniParc:UPI0002208387
UniProt:A0A096PQY2	MapMan:50.6.2	:	:	:	:

Description

Long chain acyl-CoA synthetase 5

Coordinates

chr3:-:216679147..216698259

Molecular Weight (calculated)

72670.6 Da

IEP (calculated)

5.749

GRAVY (calculated)

-0.076

Length

655 amino acids

Sequence
(BLAST)

001: MQNVVEVEPG RPAADGRPSV GPTYRSAFAR DGFPPPVPGM DSCYDIFRMA VEKYPNNRML GHREIVDGKA GAYTWKTYKE VFDIANKIGN SIRSCGLAKG
101: SRCGIYGANC PEWIITMEAC NAHGIYCVPL YDTLGAGAVE FILCHAEVEI AFAEEKKIDL LVKTLPKSNE FLKTIISFGK VTQEQKGEVQ KYGLSIYSWD
201: EFLSLAADQE FDLPVKEKAD ICTIMYTSGT TGDPKGVLIS NASIICLIAG VDRLLNYVNE ELAESDVYMS YLPLAHIFDR VVEELFIFHG ASIGFWQGDV
301: KLLVEDIGVL KPTIMCAVPR VLDRIFSGLQ AKISSGGFLK STVFNLAYRF KQFRMMSGAK HNEAASICDK VVFSKVKEGL GGNVRVILSG AAPLATHVEE
401: YLRVVTCAHV VQGYGLTETC AGSFVSLPNQ MSMIGTVGPP VPNIDVRLES VPEMGYDALA SKPRGEICIR GETLFSGYYK REDLTKEVLI DGWFHTGDIG
501: EWQPDGSMKI IDRKKNIFKL SQGEYVAVEN LENVYGLVSA IDSIWIYGNS FESFLVAVVN PNKEVLESWA AANGISGDFE SLCNNPRTKE YILGELSRIG
601: KEKRLKGFEF VKDVHLEPVP FDMDRDLITP TYKKKRPQLL KYYQGVIDNM YKSAK

Best Arabidopsis Sequence Match ( AT4G23850.1 )
(BLAST)

001: MSQQKKYIFQ VEEGKEGSDG RPSVGPVYRS IFAKDGFPDP IEGMDSCWDV FRMSVEKYPN NPMLGRREIV DGKPGKYVWQ TYQEVYDIVM KLGNSLRSVG
101: VKDEAKCGIY GANSPEWIIS MEACNAHGLY CVPLYDTLGA DAVEFIISHS EVSIVFVEEK KISELFKTCP NSTEYMKTVV SFGGVSREQK EEAETFGLVI
201: YAWDEFLKLG EGKQYDLPIK KKSDICTIMY TSGTTGDPKG VMISNESIVT LIAGVIRLLK SANEALTVKD VYLSYLPLAH IFDRVIEECF IQHGAAIGFW
301: RGDVKLLIED LAELKPTIFC AVPRVLDRVY SGLQKKLSDG GFLKKFIFDS AFSYKFGYMK KGQSHVEASP LFDKLVFSKV KQGLGGNVRI ILSGAAPLAS
401: HVESFLRVVA CCHVLQGYGL TESCAGTFVS LPDELGMLGT VGPPVPNVDI RLESVPEMEY DALASTARGE ICIRGKTLFS GYYKREDLTK EVLIDGWLHT
501: GDVGEWQPDG SMKIIDRKKN IFKLSQGEYV AVENIENIYG EVQAVDSVWV YGNSFESFLI AIANPNQHIL ERWAAENGVS GDYDALCQNE KAKEFILGEL
601: VKMAKEKKMK GFEIIKAIHL DPVPFDMERD LLTPTFKKKR PQLLKYYQSV IDEMYKTINA KFASRG

Arabidopsis Description

LACS4Long chain acyl-CoA synthetase 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9T0A0]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.