Factsheet for Zm00001d052485_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, peroxisome

Predictor Summary:

peroxisome 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, peroxisome
Any Predictor:	peroxisome
MultiLoc:	peroxisome
PProwler:	peroxisome
WoLF PSORT:	peroxisome
YLoc:	peroxisome

mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d031327_P009
Zm00001d052851_P002

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G27600.1	Zm00001d031327_P009	AT5G56290.1	16256065
AT5G27600.1	Zm00001d052851_P002	AT5G56290.1	16256065

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG27718	Sorghum	peroxisome	94.97	94.83
TraesCS5B01G131800.3	Wheat	peroxisome	86.35	85.61
TraesCS5A01G133200.2	Wheat	peroxisome	85.92	85.19
TraesCS5D01G141300.1	Wheat	peroxisome	85.78	85.04
Zm00001d023238_P002	Maize	plasma membrane	83.91	84.52
Os12t0143900-01	Rice	peroxisome	85.49	84.16
Os11t0147000-01	Rice	peroxisome	83.62	82.09
HORVU5Hr1G040740.17	Barley	peroxisome	83.05	80.84
VIT_05s0020g03080.t01	Wine grape	peroxisome	74.43	74.32
GSMUA_Achr8P24080_001	Banana	mitochondrion	71.41	73.09
Solyc01g099100.2.1	Tomato	plastid	72.99	72.99
KRG91264	Soybean	peroxisome	71.12	70.92
KRH35544	Soybean	endoplasmic reticulum, mitochondrion	70.83	70.83
Bra001177.1-P	Field mustard	plastid	70.4	70.4
CDX74115	Canola	plastid	70.26	70.26
AT3G05970.1	Thale cress	plastid	70.69	70.19
VIT_14s0128g00720.t01	Wine grape	peroxisome	63.79	70.14
CDX80638	Canola	peroxisome	70.4	70.1
Bra009951.1-P	Field mustard	peroxisome	70.26	70.06
CDY49993	Canola	mitochondrion	69.97	69.97
CDX86151	Canola	peroxisome	70.26	69.96
Solyc09g075790.2.1	Tomato	peroxisome	63.07	69.9
Bra020793.1-P	Field mustard	plastid	62.79	69.48
CDY27725	Canola	plastid	68.53	69.43
CDY05217	Canola	plastid	68.53	69.43
AT5G27600.1	Thale cress	peroxisome, plastid	69.83	69.43
CDX92843	Canola	peroxisome	20.69	67.29
Solyc09g075770.1.1	Tomato	peroxisome	64.8	64.61
PGSC0003DMT400063438	Potato	peroxisome	7.9	59.78
CDY65251	Canola	peroxisome	17.39	51.71
KRH13185	Soybean	cytosol	38.22	42.56
Zm00001d044016_P001	Maize	mitochondrion	38.36	40.76
Zm00001d053127_P005	Maize	mitochondrion	36.93	38.7
Zm00001d043851_P001	Maize	mitochondrion	36.49	38.25
Zm00001d045295_P001	Maize	extracellular	36.21	37.33
Zm00001d024723_P001	Maize	peroxisome	35.06	36.42
Zm00001d010943_P001	Maize	peroxisome	7.33	36.17
Zm00001d005019_P004	Maize	plasma membrane	31.47	30.17
Zm00001d052399_P007	Maize	peroxisome	31.47	30.17
Zm00001d023538_P002	Maize	plastid	29.74	29.66
Zm00001d053009_P009	Maize	plastid	29.6	29.51
GSMUA_AchrUn_...	Banana	peroxisome	4.89	26.98
Zm00001d034832_P006	Maize	plastid	22.7	19.8

Protein Annotations

EMBL:EU957061	EnsemblPlants:Zm00001d052485_P001	EnsemblPlants:Zm00001d052485_T001	EnsemblPlantsGene:Zm00001d052485	EntrezGene:100281546	Gene3D:3.40.50.12780
GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	InterPro:AMP-binding_CS	InterPro:AMP-dep_Synth/Lig
PANTHER:PTHR43272	PANTHER:PTHR43272:SF17	PFAM:PF00501	ProteinID:AQK57324.1	ScanProsite:PS00455	SUPFAM:SSF56801
UniParc:UPI000182C175	UniProt:B6SWE6	MapMan:5.7.3.1	:	:	:

Description

AMP-binding protein

Coordinates

chr4:-:191046511..191057081

Molecular Weight (calculated)

76963.4 Da

IEP (calculated)

6.813

GRAVY (calculated)

-0.126

Length

696 amino acids

Sequence
(BLAST)

001: MAREEQEQSA LGAAHVHHHQ PPAGGCGLSA NPTAAAAEYA HEQGYSVVLP EKLHTGKWNV YRSAHSPLRL INKFPDNPEI GTLHDNFVYA VETFRDCRYL
101: GTRIRPDGTV GDYKWMTYGE ASTSRTAIGS GLIYHGISEG ARIGLYFINR PEWIILDHAC AAYSYVSVPL YDTLGPDAVQ FIVNHATVEV IFCVPQTLSA
201: ILSFITQMPC VRLIVVVGGD DSNMPSAPAT TECKIMTYNR LHNEGKMSPQ TFRPPKPEDI ATICYTSGTT GTPKGAVLSH ENLIANVAGS SLGIKFYPSD
301: VYISYLPLAH IYERANQVAL LHYGVAIGFY QGDNLKLMDD LAVLRPTIFA SVPRLYNKIY AAITNAVKES GGLRERLYHT AYNAKRHAMI NGRNPSPMWD
401: KLVFNKIKAR LGGRMRLMTS GASPLSPDVM EFLRICFGEV LEGYGMTETS CVISTMNIGD RSIGHVGSPN PSCEVKLVDV PEMNYTSEDQ PYPRGEICVR
501: GPIIFCGYYK DEVQTREVID EDGWLHTGDI GLWLPGGRLK IIDRKKNIFK LAQGEYIAPE KIENVYAKCK FIAQCFIYGD SFNSSLVAIV AVEPDVLKAW
601: AASEGIQYED LRQLCADPRA TAAVLADMDS IAKEAQLRGF EFAKAVTLVA EPFTLDNGLL TPTFKVKRPQ AKAYFAKEIS DMYARLLETE LARSKL

Best Arabidopsis Sequence Match ( AT3G05970.1 )
(BLAST)

001: MDSSSSSSSA AARRRINAIH SHLVTSSRSS PLLRSNPTAG EFCLDNGYSV VLPEKLNTGS WNVYRSAKSP FKLVSRFPDH PDIATLHDNF EHAVHDFRDY
101: KYLGTRVRVD GTVGDYKWMT YGEAGTARTA LGSGLVHHGI PMGSSVGIYF INRPEWLIVD HACSSYSYVS VPLYDTLGPD AVKFIVNHAT VQAIFCVAET
201: LNSLLSCLSE MPSVRLVVVV GGLIESLPSL PSSSGVKVVS YSVLLNQGRS NPQRFFPPKP DDVATICYTS GTTGTPKGVV LTHANLIANV AGSSFSVKFF
301: SSDVYISYLP LAHIYERANQ ILTVYFGVAV GFYQGDNMKL LDDLAALRPT VFSSVPRLYN RIYAGIINAV KTSGGLKERL FNAAYNAKKQ ALLNGKSASP
401: IWDRLVFNKI KDRLGGRVRF MTSGASPLSP EVMEFLKVCF GGRVTEGYGM TETSCVISGM DEGDNLTGHV GSPNPACEVK LVDVPEMNYT SADQPHPRGE
501: ICVRGPIIFT GYYKDEIQTK EVIDEDGWLH TGDIGLWLPG GRLKIIDRKK NIFKLAQGEY IAPEKIENVY AKCKFVGQCF IYGDSFNSSL VAVVSVDPDV
601: LKSWAASEGI KGGDLRELCN NPRVKAAVLS DMDTVGREAQ LRGFEFAKAV TLVLEPFTLE NGLLTPTFKI KRPQAKEYFA EAITNMYKEL GASDPSANRG
701: L

Arabidopsis Description

LACS6Long chain acyl-CoA synthetase 6, peroxisomal [Source:UniProtKB/Swiss-Prot;Acc:Q8LPS1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.