Factsheet for TraesCS5B01G131800.3

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

peroxisome 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	peroxisome
Any Predictor:	mitochondrion, peroxisome, plastid
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS6A01G105000.1
TraesCS7A01G241500.5
TraesCS7B01G137000.2
TraesCS7D01G240500.3

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G27600.1	TraesCS6A01G105000.1	AT5G56290.1	16256065
AT5G27600.1	TraesCS7A01G241500.5	AT5G56290.1	16256065
AT5G27600.1	TraesCS7B01G137000.2	AT5G56290.1	16256065
AT5G27600.1	TraesCS7D01G240500.3	AT5G56290.1	16256065

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G133200.2	Wheat	peroxisome	98.29	98.29
TraesCS5D01G141300.1	Wheat	peroxisome	98.15	98.15
HORVU5Hr1G040740.17	Barley	peroxisome	94.16	92.45
Os12t0143900-01	Rice	peroxisome	87.89	87.27
Zm00001d052485_P001	Maize	mitochondrion, peroxisome	85.61	86.35
KXG27718	Sorghum	peroxisome	85.61	86.23
EES15543	Sorghum	peroxisome	83.76	86.22
Os11t0147000-01	Rice	peroxisome	87.04	86.18
Zm00001d023238_P002	Maize	plasma membrane	83.76	85.09
TraesCS4B01G133700.3	Wheat	peroxisome	84.33	85.06
GSMUA_Achr8P24080_001	Banana	mitochondrion	72.79	75.15
VIT_05s0020g03080.t01	Wine grape	peroxisome	73.93	74.46
Solyc01g099100.2.1	Tomato	plastid	73.36	73.99
CDX74115	Canola	plastid	72.22	72.84
Bra001177.1-P	Field mustard	plastid	72.22	72.84
CDY49993	Canola	mitochondrion	71.94	72.56
KRG91264	Soybean	peroxisome	72.08	72.49
AT3G05970.1	Thale cress	plastid	72.22	72.33
KRH35544	Soybean	endoplasmic reticulum, mitochondrion	71.51	72.13
CDY27725	Canola	plastid	70.37	71.91
CDY05217	Canola	plastid	70.37	71.91
VIT_14s0128g00720.t01	Wine grape	peroxisome	64.81	71.88
Bra020793.1-P	Field mustard	plastid	64.39	71.86
Solyc09g075790.2.1	Tomato	peroxisome	63.39	70.86
Bra009951.1-P	Field mustard	peroxisome	70.23	70.63
CDX92843	Canola	peroxisome	21.51	70.56
CDX86151	Canola	peroxisome	70.23	70.53
CDX80638	Canola	peroxisome	70.09	70.39
AT5G27600.1	Thale cress	peroxisome, plastid	69.52	69.71
Solyc09g075770.1.1	Tomato	peroxisome	66.1	66.48
PGSC0003DMT400063438	Potato	peroxisome	7.55	57.61
CDY65251	Canola	peroxisome	18.52	55.56
KRH13185	Soybean	cytosol	37.32	41.92
TraesCS3B01G266100.1	Wheat	golgi	37.61	40.12
TraesCS7B01G012700.1	Wheat	peroxisome	36.75	39.69
TraesCS5B01G147300.1	Wheat	peroxisome	37.18	39.43
TraesCS5B01G415100.1	Wheat	peroxisome	36.18	38.37
TraesCS1B01G093600.1	Wheat	peroxisome	35.04	36.72
TraesCS5B01G118000.1	Wheat	endoplasmic reticulum	29.91	30.09
TraesCS4B01G110600.1	Wheat	endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, vacuole	29.34	29.56
TraesCS5B01G166400.1	Wheat	golgi	29.91	28.85
TraesCS3B01G570800.1	Wheat	peroxisome	7.98	27.32
GSMUA_AchrUn_...	Banana	peroxisome	4.84	26.98
TraesCS5B01G536200.1	Wheat	plastid	22.51	21.79
TraesCS5B01G536300.1	Wheat	mitochondrion, plastid	22.65	21.06

Protein Annotations

EnsemblPlants:TraesCS5B01G131800.3	EnsemblPlantsGene:TraesCS5B01G131800	Gene3D:3.40.50.12780	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150
GO:GO:0008152	InterPro:AMP-binding_CS	InterPro:AMP-dep_Synth/Lig	PANTHER:PTHR43272	PANTHER:PTHR43272:SF17	PFAM:PF00501
ScanProsite:PS00455	SEG:seg	SUPFAM:SSF56801	TIGR:cd05927	MapMan:5.7.3.1	:

Description

No Description!

Coordinates

chr5B:-:245963615..245977636

Molecular Weight (calculated)

76961.3 Da

IEP (calculated)

7.083

GRAVY (calculated)

-0.085

Length

702 amino acids

Sequence
(BLAST)

001: MAREEEGPAM MDAAGRRLRV VSAHLEPQAG ATASLAANPT AGEYAHVQGY SVVLPEKLQT GKWNVYRSAE SPLRLINRFP ATPDIGTLHD NFVYAVETFT
101: DCRYLGTRVC ADGAVGDYKW MTYGEASTSR SAIGSGLIYH GTSEGARIGL YFINRPEWII VDHACAAYSY VSVPLYDTLG PDAVQFIVNH ATVEAIFCVP
201: QTLSTLLSFL TQMPCVRLIV VVGGDNANMP SATAAAGVEI ITYSRLHSQG KMSSQTYRPP KPEDVATICY TSGTTGTPKG AVLSHENLIA NVAGSSLGVK
301: FYPSDVYISY LPLAHIYERA NQIALLHYGV AIGFYQGDNL KLMDDLAALR PTVFASVPRL YNRIYSAITN AVKDSGGLKE RLFRTAYNAK RQALMNGRNP
401: SPMWDKLVFN KIKARLGGRV RLMTSGASPL SADVMEFLRI CFGGEVLEGY GMTETSCVIT TMDIGDKLIG HVGSPNPSCE VKLVDVPEMN YTSEDQPYPR
501: GEICVRGPTI FRGYYKDEVQ TRDVIDNDGW LHTGDIGLWL PGGRLKIIDR KKNIFKLAQG EYIAPEKIEN VYAKCKFIAQ CFIYGDSFNS FLVAIVAVEP
601: DVLKAWAASE GIQSEDLRQL CADPRAKAAV LADMDSIGKE AQLRGFEFAK AVTLVAEPFT VENGLLTPTF KVKRPQAKAY FAKELADMYA QLRDAESARQ
701: KL

Best Arabidopsis Sequence Match ( AT3G05970.1 )
(BLAST)

001: MDSSSSSSSA AARRRINAIH SHLVTSSRSS PLLRSNPTAG EFCLDNGYSV VLPEKLNTGS WNVYRSAKSP FKLVSRFPDH PDIATLHDNF EHAVHDFRDY
101: KYLGTRVRVD GTVGDYKWMT YGEAGTARTA LGSGLVHHGI PMGSSVGIYF INRPEWLIVD HACSSYSYVS VPLYDTLGPD AVKFIVNHAT VQAIFCVAET
201: LNSLLSCLSE MPSVRLVVVV GGLIESLPSL PSSSGVKVVS YSVLLNQGRS NPQRFFPPKP DDVATICYTS GTTGTPKGVV LTHANLIANV AGSSFSVKFF
301: SSDVYISYLP LAHIYERANQ ILTVYFGVAV GFYQGDNMKL LDDLAALRPT VFSSVPRLYN RIYAGIINAV KTSGGLKERL FNAAYNAKKQ ALLNGKSASP
401: IWDRLVFNKI KDRLGGRVRF MTSGASPLSP EVMEFLKVCF GGRVTEGYGM TETSCVISGM DEGDNLTGHV GSPNPACEVK LVDVPEMNYT SADQPHPRGE
501: ICVRGPIIFT GYYKDEIQTK EVIDEDGWLH TGDIGLWLPG GRLKIIDRKK NIFKLAQGEY IAPEKIENVY AKCKFVGQCF IYGDSFNSSL VAVVSVDPDV
601: LKSWAASEGI KGGDLRELCN NPRVKAAVLS DMDTVGREAQ LRGFEFAKAV TLVLEPFTLE NGLLTPTFKI KRPQAKEYFA EAITNMYKEL GASDPSANRG
701: L

Arabidopsis Description

LACS6Long chain acyl-CoA synthetase 6, peroxisomal [Source:UniProtKB/Swiss-Prot;Acc:Q8LPS1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.