Factsheet for TraesCS6A01G105000.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3A01G438000.1
TraesCS3A01G438100.1
TraesCS3B01G472000.1
TraesCS3D01G430300.1
TraesCS3D01G430400.2
TraesCS4A01G184900.2
TraesCS4B01G133700.3
TraesCS4D01G128700.3
TraesCS5A01G133200.2
TraesCS5B01G131800.3
TraesCS5D01G141300.1
TraesCS7A01G259700.1
TraesCS7B01G157800.1
TraesCS7D01G260700.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G56290.1	TraesCS7A01G259700.1	AT3G01910.1	21798944
AT5G56290.1	TraesCS7B01G157800.1	AT3G01910.1	21798944
AT5G56290.1	TraesCS7D01G260700.1	AT3G01910.1	21798944
AT5G56290.1	TraesCS4A01G184900.2	AT5G27600.1	16256065
AT5G56290.1	TraesCS4B01G133700.3	AT5G27600.1	16256065
AT5G56290.1	TraesCS4D01G128700.3	AT5G27600.1	16256065
AT5G56290.1	TraesCS5A01G133200.2	AT5G27600.1	16256065
AT5G56290.1	TraesCS5B01G131800.3	AT5G27600.1	16256065
AT5G56290.1	TraesCS5D01G141300.1	AT5G27600.1	16256065
AT5G56290.1	TraesCS3A01G438000.1	AT5G43280.1	24879895
AT5G56290.1	TraesCS3A01G438100.1	AT5G43280.1	24879895
AT5G56290.1	TraesCS3B01G472000.1	AT5G43280.1	24879895
AT5G56290.1	TraesCS3D01G430300.1	AT5G43280.1	24879895
AT5G56290.1	TraesCS3D01G430400.2	AT5G43280.1	24879895

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7A01G241500.5	Wheat	cytosol, plastid	90.41	85.7
HORVU7Hr1G049220.10	Barley	plastid	88.72	84.09
Os08t0500100-02	Rice	cytosol	78.84	75.95
EES15431	Sorghum	plastid	77.15	74.52
Zm00001d031327_P009	Maize	plastid	76.87	73.65
Zm00001d052851_P002	Maize	plastid	75.46	69.57
GSMUA_Achr7P20310_001	Banana	plastid	61.35	57.39
CDY67858	Canola	cytosol	17.63	56.56
VIT_19s0015g01940.t01	Wine grape	plastid	58.25	56.11
Solyc10g005650.2.1	Tomato	plastid	55.29	52.69
CDY49390	Canola	plastid	51.76	52.65
PGSC0003DMT400029209	Potato	cytosol, plastid	55.15	52.55
CDY11941	Canola	plastid	53.46	51.92
Bra028938.1-P	Field mustard	plastid	53.31	51.78
AT5G56290.1	Thale cress	plastid	53.03	51.65
KRH56371	Soybean	plastid	53.6	51.63
KRH62568	Soybean	plastid	53.46	51.35
CDY36789	Canola	plastid	53.31	50.07
Bra002826.1-P	Field mustard	plastid	53.03	49.34
CDY66435	Canola	cytosol	7.76	47.41
CDY69423	Canola	plastid	27.5	44.93
CDY66434	Canola	cytosol, nucleus, plastid	17.35	43.46
CDY20736	Canola	extracellular	2.26	25.0
Bra035613.1-P	Field mustard	extracellular, mitochondrion	3.95	23.73

Protein Annotations

EnsemblPlants:TraesCS6A01G105000.1	EnsemblPlantsGene:TraesCS6A01G105000	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR011990	InterPro:IPR013026	InterPro:PTS1R_family	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR10130
PANTHER:PTHR10130:SF0	PFscan:PS50293	SEG:seg	SUPFAM:SSF48452	MapMan:23.4.1.1.1	:

Description

No Description!

Coordinates

chr6A:-:73660858..73672851

Molecular Weight (calculated)

77722.5 Da

IEP (calculated)

4.480

GRAVY (calculated)

-0.612

Length

709 amino acids

Sequence
(BLAST)

001: MGTRHLITGQ NNCAPDGASS SNPFGALANT LLGQSNKAES LRGLPGASVN VPTTSDYSGA PLSTLPGSEN EFKQDQRPFA WGADFSRGGP ANDWVESFRP
101: PGHSAFGGPE ANFAEFEQIY NNAGPTLGPA LDGPPQRVLS GVLHSFILSG RAGVPFQAVP VPALGLSEAD KQCIRDRSFI MAHHILADQP EEYIQAQVNT
201: LLHSLDIDNS DRMKNPLHGP YPEMEEYWNQ SQSALRSGPM HNAANNWITE FGKQNNNPEG WITEFGKQNN NPEGWAHSFV QQYGPNGWAS EFEQHQSQMA
301: MGQMGGANMV NLAAMQQSRM LAETLSSNND PKFQMSRGEL IIEDNQVKQG SASQSSDWAD EFQTQDNANA NSWADQFVHE ELSQGSDSWV SEFSSEQNQG
401: GLKEKWVDEF SKLNVDDWAE EFSGGAFGES SADPWADEFQ NQLSASKSSG SSQGVYVSSE MNPYVGHPNP MQEEQELFRK GLLSEAALPL EAEVLKNPDN
501: AEGSRLLGVT HAENDDDQQA IAAMLRAQEA NPTNLEVLLA LGVSRHTNDI FRGGSRFQNH PKYGGLAPPH QTDSPYGPDV VRLFNEAAQM SPEDADVHIV
601: LDKAIASFKT ALQLKPQDYS LWNKLSATQA NSIQNADAVL AYQQALDLKP NYVGAWANMR NSYAKPDSIR YYVRVVSMNP KEGNAWQYLR ISLGNCCFLF
701: EAVQGRSFS

Best Arabidopsis Sequence Match ( AT5G56290.1 )
(BLAST)

001: MAMRDLVNGG AACAVPGSSS SSNPLGALTN ALLGSSSKTQ ERLKEIPNAN RSGPRPQFYS EDQQIRSLPG SELDQPLLQP GAQGSEFFRG FRSVDQNGLG
101: AAWDEVQQGG PMPPMGPMFE PVQPTFEGPP QRVLSNFLHS FVESSRGGIP FRPAPVPVLG LSQSDKQCIR DRSSIMARHF FADRGEEFIN SQVNALLSSL
201: DIDDGIQARG HVPGRFRELD DYWNESQAVV KPNLHPADNW AAEFNQHGMD HGGPDSWVQS FEQQHGVNGW ATEFEQGQSQ LMSSQMRSMD MQNIAAMEQT
301: RKLAHTLSQD GNPKFQNSRF LQFVSKMSRG ELIIDENQVK QASAPGEWAT EYEQQYLGPP SWADQFANEK LSHGPEQWAD EFASGRGQQE TAEDQWVNEF
401: SKLNVDDWID EFAEGPVGDS SADAWANAYD EFLNEKNAGK QTSGVYVFSD MNPYVGHPEP MKEGQELFRK GLLSEAALAL EAEVMKNPEN AEGWRLLGVT
501: HAENDDDQQA IAAMMRAQEA DPTNLEVLLA LGVSHTNELE QATALKYLYG WLRNHPKYGA IAPPELADSL YHADIARLFN EASQLNPEDA DVHIVLGVLY
601: NLSREFDRAI TSFQTALQLK PNDYSLWNKL GATQANSVQS ADAISAYQQA LDLKPNYVRA WANMGISYAN QGMYKESIPY YVRALAMNPK ADNAWQYLRL
701: SLSCASRQDM IEACESRNLD LLQKEFPL

Arabidopsis Description

PEX5Peroxisome biogenesis protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9FMA3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.