CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 4
mitochondrion 1
cytosol 2
vacuole 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX79533
CDX80638
CDX84682
CDX86151
CDX88648
CDY02778
CDY11841
CDY17182
CDY19499
CDY28975
CDY32739
CDY32958
CDY36555
CDY39641
CDY40577
CDY43605
CDY51271
CDY57462

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G56290.1	CDX79533	AT2G33520.1	21798944
AT5G56290.1	CDX84682	AT2G33520.1	21798944
AT5G56290.1	CDY17182	AT2G33520.1	21798944
AT5G56290.1	CDY19499	AT2G33520.1	21798944
AT5G56290.1	CDY28975	AT3G01910.1	21798944
AT5G56290.1	CDY36555	AT3G01910.1	21798944
AT5G56290.1	CDY39641	AT3G01910.1	21798944
AT5G56290.1	CDY40577	AT3G01910.1	21798944
AT5G56290.1	CDX80638	AT5G27600.1	16256065
AT5G56290.1	CDX86151	AT5G27600.1	16256065
AT5G56290.1	CDY32958	AT5G43280.1	24879895
AT5G56290.1	CDY43605	AT5G43280.1	24879895
AT5G56290.1	CDX88648	AT5G57910.1	21798944
AT5G56290.1	CDY02778	AT5G57910.1	21798944
AT5G56290.1	CDY11841	AT5G57910.1	21798944
AT5G56290.1	CDY32739	AT5G57910.1	21798944
AT5G56290.1	CDY51271	AT5G57910.1	21798944
AT5G56290.1	CDY57462	AT5G57910.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra028938.1-P	Field mustard	plastid	96.69	100.0
CDY11941	Canola	plastid	95.89	99.18
CDY67858	Canola	cytosol	27.68	94.57
AT5G56290.1	Thale cress	plastid	89.93	93.27
CDY69423	Canola	plastid	52.58	91.47
CDY49390	Canola	plastid	83.05	89.96
CDY66435	Canola	cytosol	12.72	82.76
CDY66434	Canola	cytosol, nucleus, plastid	27.81	74.2
GSMUA_Achr7P20310_001	Banana	plastid	64.37	64.12
EES15431	Sorghum	plastid	58.94	60.63
Zm00001d031327_P009	Maize	plastid	59.07	60.27
Os08t0500100-02	Rice	cytosol	58.68	60.19
HORVU7Hr1G049220.10	Barley	plastid	57.88	58.42
TraesCS7A01G241500.5	Wheat	cytosol, plastid	57.88	58.42
TraesCS7B01G137000.2	Wheat	cytosol, plastid	57.88	58.42
TraesCS7D01G240500.3	Wheat	cytosol, plastid	56.82	57.28
Zm00001d052851_P002	Maize	plastid	56.69	55.66
TraesCS6A01G105000.1	Wheat	plastid	50.07	53.31
CDY20736	Canola	extracellular	4.11	48.44

Protein Annotations

Gene3D:1.25.40.10	MapMan:23.4.1.1.1	UniProt:A0A078HHA4	EnsemblPlants:CDY36789	ProteinID:CDY36789	ProteinID:CDY36789.1
ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00062622001	InterPro:IPR011990
InterPro:IPR013026	InterPro:IPR019734	PFAM:PF00515	PFAM:PF13432	PFscan:PS50005	PFscan:PS50293
PANTHER:PTHR10130	PANTHER:PTHR10130:SF0	InterPro:PTS1R_family	SMART:SM00028	SUPFAM:SSF48452	InterPro:TPR-contain_dom
InterPro:TPR-like_helical_dom_sf	InterPro:TPR_1	InterPro:TPR_repeat	UniParc:UPI0004EE6ACE	SEG:seg	:

Description

BnaA03g10970DBnaA03g10970D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HHA4]

Coordinates

chrLK032383:+:273305..278598

Molecular Weight (calculated)

83628.6 Da

IEP (calculated)

4.485

GRAVY (calculated)

-0.492

Length

755 amino acids

Sequence
(BLAST)

001: MAMRDLVNGG AACAVPGSSS SSNPLGALTN ALLGSSSKTQ ERLKEIPNAT SSGPGPQFYS QDQHLSSLPG SELDQPLLQP GAQGTEFFRG FRSVDQNGLG
101: AAWDEVQRGG PMPPMGPMYE PVQPTFEGPP QRVLSNFLHS FVESSRGGIP FRPAPVPVLG LSQSDKQCIR DRSSIMARHF FADRGEEFIN SQVNALLSSL
201: DIDDGIQARG HMPGRFRELD DYWNESQAVT KPGLHPADSW ATEFDQHQHG MNHGGPDAWV NSFEQQHGVN GWATEFEQGQ SQLMSNQMRS MNMQNLAAME
301: QTRKLAHTLS QDVNPKFQNS RFLQFVSKMS RGELIMDENE VKPGPAPGDW ATEYEQQYLG PPSWADQFAN EKGLLATVST LVQIDLILAV VVDLLHFLAR
401: GPEQWADEFA SANRQQESAE DQWVNEFSKL NVDDWVDEFA EGPAGGSSAD AWANAYDEFL TEKNAEKQNS GVYVFSDMNP YVGHPEPMKE GQELFRKGLL
501: SEAALALEAE VMKNPENAEG WRLLGVTHAE NDDDQQAIAA MMRAQEADPS NLEVLLALGV SHTNELEQAT ALKYLYGWLR NHPKYGSIAP PELADSLYHA
601: DIARLFTEAS QMNPEDADVH IVLGVLFNLS REFDRAITSF QTALQLKPND YSLWNKLGAT QANSVQSADA ISAYQQALDL KPNYVRAWAN MGISYANQGM
701: YKESIPYYVR ALAMNPKADN AWQYLRLSLS CASRHDLIEA CEARNLDLLQ KEFPL

Best Arabidopsis Sequence Match ( AT5G56290.1 )
(BLAST)

001: MAMRDLVNGG AACAVPGSSS SSNPLGALTN ALLGSSSKTQ ERLKEIPNAN RSGPRPQFYS EDQQIRSLPG SELDQPLLQP GAQGSEFFRG FRSVDQNGLG
101: AAWDEVQQGG PMPPMGPMFE PVQPTFEGPP QRVLSNFLHS FVESSRGGIP FRPAPVPVLG LSQSDKQCIR DRSSIMARHF FADRGEEFIN SQVNALLSSL
201: DIDDGIQARG HVPGRFRELD DYWNESQAVV KPNLHPADNW AAEFNQHGMD HGGPDSWVQS FEQQHGVNGW ATEFEQGQSQ LMSSQMRSMD MQNIAAMEQT
301: RKLAHTLSQD GNPKFQNSRF LQFVSKMSRG ELIIDENQVK QASAPGEWAT EYEQQYLGPP SWADQFANEK LSHGPEQWAD EFASGRGQQE TAEDQWVNEF
401: SKLNVDDWID EFAEGPVGDS SADAWANAYD EFLNEKNAGK QTSGVYVFSD MNPYVGHPEP MKEGQELFRK GLLSEAALAL EAEVMKNPEN AEGWRLLGVT
501: HAENDDDQQA IAAMMRAQEA DPTNLEVLLA LGVSHTNELE QATALKYLYG WLRNHPKYGA IAPPELADSL YHADIARLFN EASQLNPEDA DVHIVLGVLY
601: NLSREFDRAI TSFQTALQLK PNDYSLWNKL GATQANSVQS ADAISAYQQA LDLKPNYVRA WANMGISYAN QGMYKESIPY YVRALAMNPK ADNAWQYLRL
701: SLSCASRQDM IEACESRNLD LLQKEFPL

Arabidopsis Description

PEX5Peroxisome biogenesis protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9FMA3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.