CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	secretory
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY17182	Canola	cytosol	26.58	91.3
CDX84682	Canola	cytosol, peroxisome, vacuole	50.63	38.46
AT2G33520.1	Thale cress	cytosol, nucleus, peroxisome	46.84	38.14
CDX79533	Canola	cytosol, peroxisome, vacuole	49.37	37.5

Protein Annotations

EnsemblPlants:CDY19499	EnsemblPlantsGene:GSBRNA2T00009103001	ProteinID:CDY19499	ProteinID:CDY19499.1	UniParc:UPI0004EE9D00	UniProt:A0A078G1Z8
MapMan:35.2	:	:	:	:	:

Description

BnaC04g11000DBnaC04g11000D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G1Z8]

Coordinates

chrLK032096:+:700626..701401

Molecular Weight (calculated)

8816.6 Da

IEP (calculated)

8.864

GRAVY (calculated)

-0.544

Length

79 amino acids

Sequence
(BLAST)

1: MPSSSSHCCK PTRTVIGPSP LYPPIMDAPP PTKTRFQGYY SGYGQLHPPP LCPFRDVNTT EKDNMRVAFL FLEPGNFKS

Best Arabidopsis Sequence Match ( AT2G33520.1 )
(BLAST)

1: MASYHVSHDS YQSPGPSPLY QPIIEAPPPP YPPTRTRYQD YYGGYGQPHP PPLRPYRSDH EYYGDGEYVG CFPFLRSCLT TLCCCWFVEQ CCFRSRY

Arabidopsis Description

At2g33520 [Source:UniProtKB/TrEMBL;Acc:O22802]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.