Factsheet for GSMUA_Achr7P20310_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
mitochondrion 1
cytosol 2
plastid 4

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr7P22470_001
GSMUA_Achr8P34330_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G56290.1	GSMUA_Achr8P34330_001	AT3G01910.1	21798944
AT5G56290.1	GSMUA_Achr7P22470_001	AT5G43280.1	24879895

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY67858	Canola	cytosol	24.14	82.81
CDY66435	Canola	cytosol	11.21	73.28
VIT_19s0015g01940.t01	Wine grape	plastid	70.18	72.28
PGSC0003DMT400029209	Potato	cytosol, plastid	68.47	69.76
Solyc10g005650.2.1	Tomato	plastid	68.34	69.62
Os08t0500100-02	Rice	cytosol	67.41	69.43
KRH56371	Soybean	plastid	66.89	68.89
KRH62568	Soybean	plastid	66.62	68.43
EES15431	Sorghum	plastid	65.44	67.57
TraesCS7A01G241500.5	Wheat	cytosol, plastid	66.62	67.51
AT5G56290.1	Thale cress	plastid	64.38	67.03
TraesCS7B01G137000.2	Wheat	cytosol, plastid	66.09	66.98
HORVU7Hr1G049220.10	Barley	plastid	66.09	66.98
Zm00001d031327_P009	Maize	plastid	65.3	66.89
Bra028938.1-P	Field mustard	plastid	64.12	66.58
CDY11941	Canola	plastid	63.98	66.44
CDY49390	Canola	plastid	61.08	66.43
TraesCS7D01G240500.3	Wheat	cytosol, plastid	65.44	66.22
CDY36789	Canola	plastid	64.12	64.37
Zm00001d052851_P002	Maize	plastid	63.19	62.29
Bra002826.1-P	Field mustard	plastid	61.74	61.42
TraesCS6A01G105000.1	Wheat	plastid	57.39	61.35
CDY69423	Canola	plastid	31.79	55.53
CDY66434	Canola	cytosol, nucleus, plastid	19.39	51.94
CDY20736	Canola	extracellular	3.56	42.19
Bra035613.1-P	Field mustard	extracellular, mitochondrion	5.41	34.75

Protein Annotations

Gene3D:1.25.40.10	MapMan:23.4.1.1.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0006625	GO:GO:0006810	GO:GO:0008150	GO:GO:0009719
GO:GO:0009733	GO:GO:0009987	GO:GO:0016043	EnsemblPlantsGene:GSMUA_Achr7G20310_001	EnsemblPlants:GSMUA_Achr7P20310_001	EnsemblPlants:GSMUA_Achr7T20310_001
InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734	UniProt:M0TJ68	PFAM:PF00515	PFAM:PF13181
PFAM:PF13432	PFscan:PS50005	PFscan:PS50293	PANTHER:PTHR10130	PANTHER:PTHR10130:SF0	InterPro:PTS1R_family
SMART:SM00028	SUPFAM:SSF48452	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_1	InterPro:TPR_repeat
UniParc:UPI000296477C	SEG:seg	:	:	:	:

Description

tetratricopeptide repeat domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr7G20310_001]

Coordinates

chr7:+:23419527..23438299

Molecular Weight (calculated)

84163.7 Da

IEP (calculated)

4.567

GRAVY (calculated)

-0.514

Length

758 amino acids

Sequence
(BLAST)

001: MAMRDLVTGG AACAVPGTAA SSSNPFGALA NAILGSSSKT QELKGLPGSA VNVPGPSSDF RTGAPLTTIP GLETEGQQHH QPVGQNYEFL AGFRTADHGV
101: LADAWNEIHQ PPALQTQGGK IEAQFQEFEQ IYNRGANSML PPAWDGPPQG VLSRFLHSFV DSGRAGVPFR PAALPVLGLS EGDKQCIRDR SFIMAHHIFA
201: DKSEEYINAQ VNALLHSLDI DGNERLRGPI RGSYPELEEY WTESQGAFRS GMPNPADKWV SEFARQRENG DPEAWAHSFE QLHGTNGWAS EFEHEQSQLA
301: SVGQVRGANM SHIAAMEQSR MLAHTLAQNT DPKFQNSKFL QFVSKMSRGE LIVDENQIKP ATGSLTDNWA DEYQAQYNAG SSTWADQFVH QDLPQGTDKW
401: VNEFVKENQQ QGVDDQWVNE FSKLHVQDWA EEFGQQVAEG ALGDSTADDW ANTYENFLDE QLLASKQHSG ASRGVYVFSD MNPYVGHPNP LREGQELFRK
501: GLLSEAVLAL EAEVLKNPDN AEGWRLLGIT HAENDDDQQA IAAMMRAQEV DPTNLEVLLA LGVSHTNELE QPEALRYLYK WLQNHPKYGV LATPELADSP
601: YYGDVARLFN EAAQMSPEDA DVHIVLGVLY NLSRDYDKAI ESFQTALNLK PRDYSLWNKL GATRANSIQS ADAILAYQQA LDLKPNYVRA WANMGISYAN
701: QGLYEESIRY YVRALAMNPK ADNAWQYLRI SLSCASRNDM FEACDSRNLD ILQKEFPL

Best Arabidopsis Sequence Match ( AT5G56290.1 )
(BLAST)

001: MAMRDLVNGG AACAVPGSSS SSNPLGALTN ALLGSSSKTQ ERLKEIPNAN RSGPRPQFYS EDQQIRSLPG SELDQPLLQP GAQGSEFFRG FRSVDQNGLG
101: AAWDEVQQGG PMPPMGPMFE PVQPTFEGPP QRVLSNFLHS FVESSRGGIP FRPAPVPVLG LSQSDKQCIR DRSSIMARHF FADRGEEFIN SQVNALLSSL
201: DIDDGIQARG HVPGRFRELD DYWNESQAVV KPNLHPADNW AAEFNQHGMD HGGPDSWVQS FEQQHGVNGW ATEFEQGQSQ LMSSQMRSMD MQNIAAMEQT
301: RKLAHTLSQD GNPKFQNSRF LQFVSKMSRG ELIIDENQVK QASAPGEWAT EYEQQYLGPP SWADQFANEK LSHGPEQWAD EFASGRGQQE TAEDQWVNEF
401: SKLNVDDWID EFAEGPVGDS SADAWANAYD EFLNEKNAGK QTSGVYVFSD MNPYVGHPEP MKEGQELFRK GLLSEAALAL EAEVMKNPEN AEGWRLLGVT
501: HAENDDDQQA IAAMMRAQEA DPTNLEVLLA LGVSHTNELE QATALKYLYG WLRNHPKYGA IAPPELADSL YHADIARLFN EASQLNPEDA DVHIVLGVLY
601: NLSREFDRAI TSFQTALQLK PNDYSLWNKL GATQANSVQS ADAISAYQQA LDLKPNYVRA WANMGISYAN QGMYKESIPY YVRALAMNPK ADNAWQYLRL
701: SLSCASRQDM IEACESRNLD LLQKEFPL

Arabidopsis Description

PEX5Peroxisome biogenesis protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9FMA3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.