Factsheet for Bra028938.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 5
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002685.1-P
Bra006793.1-P
Bra009951.1-P
Bra020404.1-P
Bra022105.1-P
Bra026136.1-P
Bra027479.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G56290.1	Bra022105.1-P	AT3G01910.1	21798944
AT5G56290.1	Bra026136.1-P	AT3G01910.1	21798944
AT5G56290.1	Bra009951.1-P	AT5G27600.1	16256065
AT5G56290.1	Bra027479.1-P	AT5G43280.1	24879895
AT5G56290.1	Bra002685.1-P	AT5G57910.1	21798944
AT5G56290.1	Bra006793.1-P	AT5G57910.1	21798944
AT5G56290.1	Bra020404.1-P	AT5G57910.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY36789	Canola	plastid	100.0	96.69
AT5G56290.1	Thale cress	plastid	93.01	93.27
Bra002826.1-P	Field mustard	plastid	90.96	87.14
VIT_19s0015g01940.t01	Wine grape	plastid	70.96	70.38
KRH56371	Soybean	plastid	68.77	68.21
Solyc10g005650.2.1	Tomato	plastid	69.45	68.15
KRH62568	Soybean	plastid	68.77	68.02
PGSC0003DMT400029209	Potato	cytosol, plastid	69.04	67.74
GSMUA_Achr7P20310_001	Banana	plastid	66.58	64.12
EES15431	Sorghum	plastid	60.96	60.63
Zm00001d031327_P009	Maize	plastid	61.1	60.27
Os08t0500100-02	Rice	cytosol	60.68	60.19
TraesCS7A01G241500.5	Wheat	cytosol, plastid	59.86	58.42
TraesCS7B01G137000.2	Wheat	cytosol, plastid	59.86	58.42
HORVU7Hr1G049220.10	Barley	plastid	59.86	58.42
TraesCS7D01G240500.3	Wheat	cytosol, plastid	58.77	57.28
Zm00001d052851_P002	Maize	plastid	58.63	55.66
TraesCS6A01G105000.1	Wheat	plastid	51.78	53.31
Bra035613.1-P	Field mustard	extracellular, mitochondrion	6.03	37.29

Protein Annotations

Gene3D:1.25.40.10	MapMan:23.4.1.1.1	EnsemblPlantsGene:Bra028938	EnsemblPlants:Bra028938.1	EnsemblPlants:Bra028938.1-P	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734	UniProt:M4EJH2
PFAM:PF00515	PFAM:PF13432	PFscan:PS50005	PFscan:PS50293	PANTHER:PTHR10130	PANTHER:PTHR10130:SF0
InterPro:PTS1R_family	SMART:SM00028	SUPFAM:SSF48452	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_1
InterPro:TPR_repeat	UniParc:UPI000253FD9B	SEG:seg	:	:	:

Description

AT5G56290 (E=0.0) PEX5, ATPEX5 | PEX5 (PEROXIN 5); peroxisome matrix targeting signal-1 binding / protein binding

Coordinates

chrA03:-:5500756..5505700

Molecular Weight (calculated)

80983.2 Da

IEP (calculated)

4.499

GRAVY (calculated)

-0.572

Length

730 amino acids

Sequence
(BLAST)

001: MAMRDLVNGG AACAVPGSSS SSNPLGALTN ALLGSSSKTQ ERLKEIPNAT SSGPGPQFYS QDQHLSSLPG SELDQPLLQP GAQGTEFFRG FRSVDQNGLG
101: AAWDEVQRGG PMPPMGPMYE PVQPTFEGPP QRVLSNFLHS FVESSRGGIP FRPAPVPVLG LSQSDKQCIR DRSSIMARHF FADRGEEFIN SQVNALLSSL
201: DIDDGIQARG HMPGRFRELD DYWNESQAVT KPGLHPADSW ATEFDQHQHG MNHGGPDAWV NSFEQQHGVN GWATEFEQGQ SQLMSNQMRS MNMQNLAAME
301: QTRKLAHTLS QDVNPKFQNS RFLQFVSKMS RGELIMDENE VKPGPAPGDW ATEYEQQYLG PPSWADQFAN EKLARGPEQW ADEFASANRQ QESAEDQWVN
401: EFSKLNVDDW VDEFAEGPAG GSSADAWANA YDEFLTEKNA EKQNSGVYVF SDMNPYVGHP EPMKEGQELF RKGLLSEAAL ALEAEVMKNP ENAEGWRLLG
501: VTHAENDDDQ QAIAAMMRAQ EADPSNLEVL LALGVSHTNE LEQATALKYL YGWLRNHPKY GSIAPPELAD SLYHADIARL FTEASQMNPE DADVHIVLGV
601: LFNLSREFDR AITSFQTALQ LKPNDYSLWN KLGATQANSV QSADAISAYQ QALDLKPNYV RAWANMGISY ANQGMYKESI PYYVRALAMN PKADNAWQYL
701: RLSLSCASRH DLIEACEARN LDLLQKEFPL

Best Arabidopsis Sequence Match ( AT5G56290.1 )
(BLAST)

001: MAMRDLVNGG AACAVPGSSS SSNPLGALTN ALLGSSSKTQ ERLKEIPNAN RSGPRPQFYS EDQQIRSLPG SELDQPLLQP GAQGSEFFRG FRSVDQNGLG
101: AAWDEVQQGG PMPPMGPMFE PVQPTFEGPP QRVLSNFLHS FVESSRGGIP FRPAPVPVLG LSQSDKQCIR DRSSIMARHF FADRGEEFIN SQVNALLSSL
201: DIDDGIQARG HVPGRFRELD DYWNESQAVV KPNLHPADNW AAEFNQHGMD HGGPDSWVQS FEQQHGVNGW ATEFEQGQSQ LMSSQMRSMD MQNIAAMEQT
301: RKLAHTLSQD GNPKFQNSRF LQFVSKMSRG ELIIDENQVK QASAPGEWAT EYEQQYLGPP SWADQFANEK LSHGPEQWAD EFASGRGQQE TAEDQWVNEF
401: SKLNVDDWID EFAEGPVGDS SADAWANAYD EFLNEKNAGK QTSGVYVFSD MNPYVGHPEP MKEGQELFRK GLLSEAALAL EAEVMKNPEN AEGWRLLGVT
501: HAENDDDQQA IAAMMRAQEA DPTNLEVLLA LGVSHTNELE QATALKYLYG WLRNHPKYGA IAPPELADSL YHADIARLFN EASQLNPEDA DVHIVLGVLY
601: NLSREFDRAI TSFQTALQLK PNDYSLWNKL GATQANSVQS ADAISAYQQA LDLKPNYVRA WANMGISYAN QGMYKESIPY YVRALAMNPK ADNAWQYLRL
701: SLSCASRQDM IEACESRNLD LLQKEFPL

Arabidopsis Description

PEX5Peroxisome biogenesis protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9FMA3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.