Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 1
- nucleus 3
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra005056.1-P | |
| Bra011328.1-P | |
| Bra015543.1-P | |
| Bra017974.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G57910.1 | Bra015543.1-P | AT1G07000.1 | 21798944 |
| AT5G57910.1 | Bra017974.1-P | AT3G49580.1 | 21798944 |
| AT5G57910.1 | Bra011328.1-P | AT4G32190.1 | 21798944 |
| AT5G57910.1 | Bra005056.1-P | AT5G25070.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX88648 | Canola | nucleus | 99.39 | 76.89 |
| CDY11841 | Canola | nucleus | 95.12 | 73.24 |
| Bra020404.1-P | Field mustard | nucleus | 66.46 | 53.43 |
| Bra002685.1-P | Field mustard | nucleus | 62.2 | 52.58 |
| AT5G57910.1 | Thale cress | nucleus | 61.59 | 48.79 |
| Bra041159.1-P | Field mustard | cytosol | 26.22 | 32.82 |
| Bra011204.1-P | Field mustard | nucleus | 40.24 | 31.88 |
| Bra024058.1-P | Field mustard | nucleus | 35.37 | 28.57 |
| VIT_11s0037g00390.t01 | Wine grape | nucleus | 35.98 | 25.0 |
| KRH03036 | Soybean | nucleus | 37.8 | 24.12 |
| KRH72318 | Soybean | cytosol | 36.59 | 23.17 |
| Solyc07g005690.2.1 | Tomato | cytosol | 35.37 | 19.46 |
| PGSC0003DMT400028944 | Potato | cytosol | 32.32 | 17.67 |
| Solyc12g009970.1.1 | Tomato | nucleus | 29.27 | 16.22 |
| PGSC0003DMT400020258 | Potato | nucleus | 28.05 | 15.59 |
Protein Annotations
Description
AT5G57910 (E=1e-036) | unknown protein
Coordinates
chrA03:+:5065863..5066533
Molecular Weight (calculated)
19059.7 Da
IEP (calculated)
10.582
GRAVY (calculated)
-1.258
Length
164 amino acids
Sequence
(BLAST)
(BLAST)
001: MRERKATLMA EVRFLRRRYR HLRQEDQPVK QPPGVKKIRG RSNGGKKSKR QIVRVEVSPD NKRSEAEVKH VSLPDLNHTG NETKTSLEKR VPLFDLNQIS
101: GEEEEETEAG NNSEERMRVE DSKRISIIEM QQQKEMKLSS CRDGENGSNK RKISWQDPVA PLRV
101: GEEEEETEAG NNSEERMRVE DSKRISIIEM QQQKEMKLSS CRDGENGSNK RKISWQDPVA PLRV
001: MRKRLQAVRE RKATLMAEVR FLRRRYRHLR QDQPQEIKKV RRSNGGKKIR VEVSPSNKSE AETKHVSLPD LNHSEKAHDE TKTSPKRRVP LFDLNQISGE
101: EEQETEAVDN NQENTRVEES NSCKRLMISS IEMQQKDVKP SSCRNGGNGS NKRKISWQDP VAALRV
101: EEQETEAVDN NQENTRVEES NSCKRLMISS IEMQQKDVKP SSCRNGGNGS NKRKISWQDP VAALRV
Arabidopsis Description
At5g57910 [Source:UniProtKB/TrEMBL;Acc:Q8GW24]
SUBAcon: [mitochondrion,nucleus]
SUBAcon: [mitochondrion,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.