Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY32739 | Canola | nucleus | 65.7 | 70.47 |
| CDY02778 | Canola | nucleus | 65.7 | 69.74 |
| Bra002685.1-P | Field mustard | nucleus | 64.73 | 69.07 |
| CDY51271 | Canola | nucleus | 64.73 | 69.07 |
| CDY57462 | Canola | nucleus | 66.18 | 68.16 |
| Bra020404.1-P | Field mustard | nucleus | 65.7 | 66.67 |
| CDX88648 | Canola | nucleus | 64.73 | 63.21 |
| CDY11841 | Canola | nucleus | 64.25 | 62.44 |
| Bra006793.1-P | Field mustard | mitochondrion, nucleus | 48.79 | 61.59 |
| VIT_11s0037g00390.t01 | Wine grape | nucleus | 37.2 | 32.63 |
| KRH03036 | Soybean | nucleus | 39.13 | 31.52 |
| KRH72318 | Soybean | cytosol | 37.68 | 30.12 |
| AT4G30630.1 | Thale cress | nucleus | 33.33 | 29.11 |
| Solyc12g009970.1.1 | Tomato | nucleus | 34.78 | 24.32 |
| Solyc07g005690.2.1 | Tomato | cytosol | 34.78 | 24.16 |
| PGSC0003DMT400020258 | Potato | nucleus | 33.33 | 23.39 |
| PGSC0003DMT400028944 | Potato | cytosol | 33.33 | 23.0 |
Protein Annotations
| MapMan:35.2 | EntrezGene:835902 | ProteinID:AED96970.1 | EMBL:AK119128 | ArrayExpress:AT5G57910 | EnsemblPlantsGene:AT5G57910 |
| RefSeq:AT5G57910 | TAIR:AT5G57910 | RefSeq:AT5G57910-TAIR-G | EnsemblPlants:AT5G57910.1 | TAIR:AT5G57910.1 | EMBL:BT005226 |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008168 |
| GO:GO:0016740 | GO:GO:0032259 | RefSeq:NP_568871.1 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025281 | PANTHER:PTHR34807 | PANTHER:PTHR34807:SF3 | UniProt:Q8GW24 | UniParc:UPI000000C592 | SEG:seg |
Description
At5g57910 [Source:UniProtKB/TrEMBL;Acc:Q8GW24]
Coordinates
chr5:-:23451081..23452963
Molecular Weight (calculated)
24094.4 Da
IEP (calculated)
10.253
GRAVY (calculated)
-1.227
Length
207 amino acids
Sequence
(BLAST)
(BLAST)
001: MNPTHGDFTP LNSNHFEDPK VRFRHHSLMQ DYGELHMETE AMRKRLQAVR ERKATLMAEV RFLRRRYRHL RQDQPQEIKK VRRSNGGKKI RVEVSPSNKS
101: EAETKHVSLP DLNHSEKAHD ETKTSPKRRV PLFDLNQISG EEEQETEAVD NNQENTRVEE SNSCKRLMIS SIEMQQKDVK PSSCRNGGNG SNKRKISWQD
201: PVAALRV
101: EAETKHVSLP DLNHSEKAHD ETKTSPKRRV PLFDLNQISG EEEQETEAVD NNQENTRVEE SNSCKRLMIS SIEMQQKDVK PSSCRNGGNG SNKRKISWQD
201: PVAALRV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.