Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc12g009970.1.1 | Tomato | nucleus | 89.83 | 89.53 |
| PGSC0003DMT400028944 | Potato | cytosol | 52.54 | 51.67 |
| VIT_11s0037g00390.t01 | Wine grape | nucleus | 36.27 | 45.34 |
| KRH03036 | Soybean | nucleus | 34.24 | 39.3 |
| KRH72318 | Soybean | cytosol | 34.24 | 39.0 |
| CDX68674 | Canola | nucleus | 26.78 | 37.98 |
| Bra011204.1-P | Field mustard | nucleus | 26.44 | 37.68 |
| CDY28197 | Canola | nucleus | 26.44 | 37.68 |
| Bra002685.1-P | Field mustard | nucleus | 23.05 | 35.05 |
| CDY51271 | Canola | nucleus | 22.71 | 34.54 |
| Bra024058.1-P | Field mustard | nucleus | 23.73 | 34.48 |
| CDY39225 | Canola | nucleus | 23.05 | 34.0 |
| CDY57462 | Canola | nucleus | 23.05 | 33.83 |
| AT5G57910.1 | Thale cress | nucleus | 23.39 | 33.33 |
| CDY02778 | Canola | nucleus | 21.02 | 31.79 |
| CDY32739 | Canola | nucleus | 20.34 | 31.09 |
| Bra020404.1-P | Field mustard | nucleus | 21.36 | 30.88 |
| AT4G30630.1 | Thale cress | nucleus | 23.73 | 29.54 |
| CDY11841 | Canola | nucleus | 21.02 | 29.11 |
| Bra041159.1-P | Field mustard | cytosol | 12.88 | 29.01 |
| CDX88648 | Canola | nucleus | 20.34 | 28.3 |
| Bra006793.1-P | Field mustard | mitochondrion, nucleus | 15.59 | 28.05 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400020258 | EnsemblPlantsGene:PGSC0003DMG400007832 | EntrezGene:102597642 | PANTHER:PTHR34807 | PANTHER:PTHR34807:SF3 | PGSC:PGSC0003DMG400007832 |
| RefSeq:XP_006350108.1 | SEG:seg | UniParc:UPI000296DDCB | UniProt:M1AD63 | MapMan:35.2 | : |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400007832]
Coordinates
chr12:+:2375229..2378947
Molecular Weight (calculated)
33794.6 Da
IEP (calculated)
10.474
GRAVY (calculated)
-0.893
Length
295 amino acids
Sequence
(BLAST)
(BLAST)
001: MSKKMKRGVL ESSSYGVFED TKASLKHQTL LQDYKELQKE TDGIRHKLED SKLRKLRLLA EVRFLRQRHK HLLHKSLSPP KGKELVSLPD VETYPRSRSR
101: DEVMRKKEAK LNKLPPLPGP KQNGRIQVAK VVVSKKIPDI HVNQKHRLGG RKDAVFHNAD LELNRKSRVY RGKEVSSRKG APAYDLKQNE RLYIADNAIL
201: QSSSPTFDLN QETGHSGKET ALPTRAPVFD LNEISMGEEE RDINFEQVQL EEPKRSPIQN LNDDVKLLVC RNVGEDTSRV GKQKLSWQDS VALRV
101: DEVMRKKEAK LNKLPPLPGP KQNGRIQVAK VVVSKKIPDI HVNQKHRLGG RKDAVFHNAD LELNRKSRVY RGKEVSSRKG APAYDLKQNE RLYIADNAIL
201: QSSSPTFDLN QETGHSGKET ALPTRAPVFD LNEISMGEEE RDINFEQVQL EEPKRSPIQN LNDDVKLLVC RNVGEDTSRV GKQKLSWQDS VALRV
001: MKKTNFVSSA SGGDPMIRLT FVQVLELEKE LEIKRKRLEM IKQKRLTLKS EVRFLRRRYE HLKQDQTLET SPEMLRLSES GGLEVPRKPS GERKKQSGVR
101: ASVPCFDLKL KNTICNEKEA LANNVASCDL DKKRKRSRGS DVLTFPVSLP DLNGEGNTSG TDKVPGFDLN QISREEEEPE VNGEHMVAEA MKNAMLDNRI
201: SDLHVERKLP ICGDVEKELN RAVKRKVTWQ DPVALSV
101: ASVPCFDLKL KNTICNEKEA LANNVASCDL DKKRKRSRGS DVLTFPVSLP DLNGEGNTSG TDKVPGFDLN QISREEEEPE VNGEHMVAEA MKNAMLDNRI
201: SDLHVERKLP ICGDVEKELN RAVKRKVTWQ DPVALSV
Arabidopsis Description
At4g30630 [Source:UniProtKB/TrEMBL;Acc:Q9M097]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.