Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- plastid 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc03g096770.1.1 | Tomato | nucleus | 90.68 | 93.04 |
| PGSC0003DMT400001474 | Potato | plastid | 78.81 | 79.49 |
| PGSC0003DMT400069515 | Potato | cytosol | 70.34 | 73.45 |
| PGSC0003DMT400001476 | Potato | plastid | 69.49 | 73.21 |
| Bra017974.1-P | Field mustard | cytosol | 37.29 | 51.16 |
| KRH53667 | Soybean | cytosol, extracellular, nucleus | 50.85 | 50.0 |
| AT5G24655.1 | Thale cress | cytosol | 38.14 | 48.91 |
| VIT_16s0098g00600.t01 | Wine grape | cytosol, nucleus, plastid | 55.93 | 48.18 |
| KRH64261 | Soybean | nucleus | 49.15 | 47.93 |
| AT5G24660.1 | Thale cress | cytosol, nucleus, plastid | 37.29 | 46.81 |
| Bra017975.1-P | Field mustard | cytosol | 38.14 | 46.39 |
| AT3G49570.1 | Thale cress | cytosol | 38.14 | 46.39 |
| CDY08148 | Canola | cytosol | 36.44 | 46.24 |
| CDY08146 | Canola | cytosol | 37.29 | 45.36 |
| CDY69515 | Canola | cytosol, nucleus, plastid | 35.59 | 45.16 |
| CDX80461 | Canola | cytosol, nucleus, plastid | 35.59 | 45.16 |
| Bra009783.1-P | Field mustard | cytosol, nucleus, plastid | 35.59 | 45.16 |
| AT3G49580.1 | Thale cress | cytosol, nucleus, plastid | 34.75 | 43.62 |
| CDY05452 | Canola | cytosol, nucleus, plastid | 35.59 | 43.3 |
| Bra020466.1-P | Field mustard | nucleus | 35.59 | 43.3 |
| KRH16959 | Soybean | nucleus | 42.37 | 42.73 |
| CDY05402 | Canola | nucleus | 34.75 | 42.27 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400001475 | EnsemblPlantsGene:PGSC0003DMG400000546 | EntrezGene:102598380 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0009987 |
| GO:GO:0033554 | ncoils:Coil | PANTHER:PTHR34283 | PANTHER:PTHR34283:SF1 | PGSC:PGSC0003DMG400000546 | RefSeq:XP_006347545.1 |
| SEG:seg | UniParc:UPI000296B81E | UniProt:M0ZIJ1 | MapMan:35.2 | : | : |
Description
UP-9A [Source:PGSC_GENE;Acc:PGSC0003DMG400000546]
Coordinates
chr3:+:47124012..47124843
Molecular Weight (calculated)
13829.5 Da
IEP (calculated)
5.402
GRAVY (calculated)
-0.805
Length
118 amino acids
Sequence
(BLAST)
(BLAST)
001: MAPTIAVPST QTKPYHRREI SAVPESEVLR RRNEELEKEL KKSFEREEKM REELQKIWER LRVAEEAEER LCSQLGEFEA EAVDQARAYR TRVMNLMDQL
101: SLAQKLLESA SVVVPNSR
101: SLAQKLLESA SVVVPNSR
1: MGKGGNYVTV AASEVDELRR KNGEMEKAVE EMKKEMLQLW RRTQVAEEAE ERLCSQLAEL EAESLDQARD YHSRIIFLMN ELSRLSSDSA SASP
Arabidopsis Description
LSU2Protein RESPONSE TO LOW SULFUR 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FIR9]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.