Factsheet for PGSC0003DMT400030265

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 10

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g091180.2.1	Tomato	extracellular, mitochondrion, nucleus, unclear	98.78	98.1
PGSC0003DMT400069855	Potato	mitochondrion	89.39	89.7
VIT_05s0051g00340.t01	Wine grape	mitochondrion	88.52	88.52
GSMUA_Achr10P...	Banana	mitochondrion	87.48	87.48
KRH33513	Soybean	mitochondrion	87.3	87.3
KRG92192	Soybean	mitochondrion	87.13	87.13
KRG90277	Soybean	mitochondrion	87.13	87.13
KRH34594	Soybean	mitochondrion	87.3	87.0
GSMUA_Achr1P11160_001	Banana	mitochondrion	86.26	85.81
Os10t0462900-01	Rice	mitochondrion	85.57	85.71
EER94121	Sorghum	mitochondrion	85.22	84.92
CDY72107	Canola	mitochondrion	45.22	84.69
Zm00001d014090_P002	Maize	mitochondrion	84.87	84.58
TraesCS1D01G144000.1	Wheat	mitochondrion	84.35	84.49
TraesCS1A01G145000.1	Wheat	mitochondrion	84.35	84.49
TraesCS1B01G162300.1	Wheat	mitochondrion	84.35	84.49
Zm00001d032789_P001	Maize	plastid	84.52	84.38
TraesCS4A01G409100.1	Wheat	mitochondrion	84.35	84.2
Os03t0143400-01	Rice	mitochondrion	84.35	84.06
TraesCS4B01G307700.1	Wheat	mitochondrion	84.17	84.03
CDX79518	Canola	cytosol	29.39	83.66
CDX84697	Canola	mitochondrion	81.39	83.13
AT2G33210.1	Thale cress	mitochondrion	84.52	83.08
Bra022931.1-P	Field mustard	mitochondrion	80.0	82.59
Bra005514.1-P	Field mustard	mitochondrion	80.0	82.29
CDY17152	Canola	mitochondrion	81.39	81.53
CDY19471	Canola	mitochondrion	83.65	81.11
KXG40202	Sorghum	cytosol	57.22	80.84
HORVU4Hr1G078820.3	Barley	plastid	84.35	76.86
PGSC0003DMT400006642	Potato	cytosol	66.43	74.76
TraesCS4D01G305900.1	Wheat	golgi	84.17	73.56
HORVU1Hr1G038680.8	Barley	mitochondrion	84.52	72.65
Bra021836.1-P	Field mustard	cytosol	49.22	63.31
GSMUA_Achr10P...	Banana	cytosol	14.61	60.87
CDY66712	Canola	mitochondrion	63.65	60.7
CDY37741	Canola	mitochondrion	62.78	59.08
TraesCS4B01G266200.1	Wheat	cytosol	39.3	54.46
PGSC0003DMT400061700	Potato	extracellular	45.74	43.91
PGSC0003DMT400006501	Potato	plastid	45.22	42.98
PGSC0003DMT400002933	Potato	cytosol, extracellular, plastid	43.3	42.35
PGSC0003DMT400031301	Potato	plastid	42.96	41.94
PGSC0003DMT400064673	Potato	cytosol	30.43	38.8
PGSC0003DMT400027020	Potato	cytosol	35.48	38.06
HORVU4Hr1G071510.2	Barley	cytosol	42.78	34.55

Protein Annotations

Gene3D:1.10.560.10	EntrezGene:102590709	MapMan:19.1.7.1	Gene3D:3.30.260.10	Gene3D:3.50.7.10	InterPro:Chaperonin_Cpn60_CS
InterPro:Chaprnin_Cpn60	InterPro:Cpn60/TCP-1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006457	GO:GO:0008150
GO:GO:0009987	GO:GO:0042026	InterPro:GROEL-like_equatorial_sf	InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409	InterPro:IPR027410
InterPro:IPR027413	UniProt:M1ATY8	HAMAP:MF_00600	PFAM:PF00118	EnsemblPlantsGene:PGSC0003DMG400011575	PGSC:PGSC0003DMG400011575
EnsemblPlants:PGSC0003DMT400030265	PRINTS:PR00298	ScanProsite:PS00296	PANTHER:PTHR11353	PANTHER:PTHR11353:SF85	SUPFAM:SSF48592
SUPFAM:SSF52029	SUPFAM:SSF54849	InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02348	UniParc:UPI000294E9BD	RefSeq:XP_006340914.1

Description

Chaperonin CPN60-2, mitochondrial [Source:PGSC_GENE;Acc:PGSC0003DMG400011575]

Coordinates

chr9:+:57708936..57714629

Molecular Weight (calculated)

61391.2 Da

IEP (calculated)

5.394

GRAVY (calculated)

-0.063

Length

575 amino acids

Sequence
(BLAST)

001: MYRFAANLAS KARVARISSQ QIGGRFNWSR NYAAKDIRFG VEARALMLQG VEQLADAVKV TMGPKGRNVV IEQSWGAPKV TKDGVTVAKS IEFKDKIQNV
101: GASLVKQVAN ATNDVAGDGT TCATVLTRAI FAEGCKSVAA GMNAMDLRRG ITMAVDSVVT NLKSRARMIS TSEEIAQVGT ISANGEREIG DLIARAMEKV
201: GKEGVITIQD GKTLLNELDV VEGMKLDRGY ISPYFITNQK NQKCELDNPL ILIHEKKISS VNAVVKALEL ALKRQRPLLI VAEDVDNEAL ATLILNKLRA
301: GIKVCAIKAP GFGENRKAYL QDLAILTGGQ VITEELGLNI ENLEFEMLGT SKEATISKDD TVILDGAGKK KSIEERCELI RSTIEQSTSD YDKEKLQERL
401: AKLSGGVAVL KIGGASEAEV GEKKDRVTDA LNATKAAVEE GIVPGGGVAL LYAARELDNL TTANFDQKIG VQIIQNALKT PVHTIASNAG VEGAVVVGKL
501: LDQDNLDLGY DAAKGEYVDM IKAGIIDPVK VIRTALVDAA SVSSLLTTTE AVVVELPKDE KESPAMGGGM GGMDF

Best Arabidopsis Sequence Match ( AT3G23990.1 )
(BLAST)

001: MYRFASNLAS KARIAQNARQ VSSRMSWSRN YAAKEIKFGV EARALMLKGV EDLADAVKVT MGPKGRNVVI EQSWGAPKVT KDGVTVAKSI EFKDKIKNVG
101: ASLVKQVANA TNDVAGDGTT CATVLTRAIF AEGCKSVAAG MNAMDLRRGI SMAVDAVVTN LKSKARMIST SEEIAQVGTI SANGEREIGE LIAKAMEKVG
201: KEGVITIQDG KTLFNELEVV EGMKLDRGYT SPYFITNQKT QKCELDDPLI LIHEKKISSI NSIVKVLELA LKRQRPLLIV SEDVESDALA TLILNKLRAG
301: IKVCAIKAPG FGENRKANLQ DLAALTGGEV ITDELGMNLE KVDLSMLGTC KKVTVSKDDT VILDGAGDKK GIEERCEQIR SAIELSTSDY DKEKLQERLA
401: KLSGGVAVLK IGGASEAEVG EKKDRVTDAL NATKAAVEEG ILPGGGVALL YAARELEKLP TANFDQKIGV QIIQNALKTP VYTIASNAGV EGAVIVGKLL
501: EQDNPDLGYD AAKGEYVDMV KAGIIDPLKV IRTALVDAAS VSSLLTTTEA VVVDLPKDES ESGAAGAGMG GMGGMDY

Arabidopsis Description

CPN60Chaperonin CPN60, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:P29197]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.