CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY59049	Canola	mitochondrion	49.84	70.18
CDX84697	Canola	mitochondrion	99.35	54.17
CDY17152	Canola	mitochondrion	95.77	51.22
CDY19471	Canola	mitochondrion	95.77	49.58
AT2G33210.1	Thale cress	mitochondrion	92.83	48.72
GSMUA_Achr10P...	Banana	mitochondrion	87.3	46.61
CDX94835	Canola	mitochondrion	85.99	45.75
PGSC0003DMT400069855	Potato	mitochondrion	84.69	45.38
TraesCS1D01G144000.1	Wheat	mitochondrion	84.69	45.3
PGSC0003DMT400030265	Potato	mitochondrion	84.69	45.22
Solyc05g053470.2.1	Tomato	plastid	84.36	45.2
GSMUA_Achr1P11160_001	Banana	mitochondrion	85.02	45.16
TraesCS1B01G162300.1	Wheat	mitochondrion	84.04	44.95
TraesCS1A01G145000.1	Wheat	mitochondrion	84.04	44.95
Os10t0462900-01	Rice	mitochondrion	83.39	44.6
Solyc09g091180.2.1	Tomato	extracellular, mitochondrion, nucleus, unclear	84.04	44.56
Zm00001d014090_P002	Maize	mitochondrion	83.71	44.54
Os03t0143400-01	Rice	mitochondrion	83.71	44.54
Zm00001d032789_P001	Maize	plastid	83.39	44.44
EER94121	Sorghum	mitochondrion	83.06	44.19
TraesCS4B01G307700.1	Wheat	mitochondrion	82.74	44.1
TraesCS4A01G409100.1	Wheat	mitochondrion	82.74	44.1
CDX93002	Canola	mitochondrion	77.85	43.45
HORVU4Hr1G078820.3	Barley	plastid	82.74	40.25
TraesCS4D01G305900.1	Wheat	golgi	82.74	38.6
HORVU1Hr1G038680.8	Barley	mitochondrion	84.04	38.56
CDX82514	Canola	mitochondrion	71.34	38.29
CDX75733	Canola	mitochondrion	71.01	38.11
CDY66712	Canola	mitochondrion	72.96	37.15
CDY37741	Canola	mitochondrion	72.96	36.66
CDY31193	Canola	plastid	25.73	33.33
KXG40202	Sorghum	cytosol	35.5	26.78
CDY11918	Canola	plastid	44.63	23.03
CDX71396	Canola	plastid	39.41	22.87
CDY32855	Canola	plastid	43.97	22.73
CDY08245	Canola	plastid	43.65	22.33
CDX82537	Canola	plastid	42.67	22.32
CDY36809	Canola	plastid	43.65	22.08
CDY40825	Canola	endoplasmic reticulum, vacuole	15.31	22.07
CDX75713	Canola	plastid	42.35	21.92
GSMUA_Achr10P...	Banana	cytosol	9.77	21.74
CDY30514	Canola	plastid	40.72	21.37
CDY26100	Canola	plastid	43.65	21.34
CDX75715	Canola	cytosol	39.09	21.31
CDX83280	Canola	plastid	40.39	21.31
TraesCS4B01G266200.1	Wheat	cytosol	28.66	21.2
CDY31190	Canola	plastid	40.39	21.16
CDY04527	Canola	plastid	41.04	21.14
CDY20555	Canola	plastid	41.69	21.09
CDY66193	Canola	plastid	41.37	20.92
CDX77147	Canola	plastid	41.04	20.26
CDY56074	Canola	plastid	31.27	20.21
CDY02438	Canola	cytosol	43.32	19.08
CDY47184	Canola	plastid	35.5	18.86
CDY02601	Canola	plastid	35.5	18.86
CDY23605	Canola	cytosol	25.41	17.97
HORVU4Hr1G071510.2	Barley	cytosol	41.37	17.84
CDY10557	Canola	endoplasmic reticulum, plastid	43.32	16.04
CDY43988	Canola	cytosol	23.78	14.2
CDY59050	Canola	cytosol	15.31	13.91
CDX72433	Canola	endoplasmic reticulum	10.1	9.81
CDX86994	Canola	mitochondrion, plastid	18.24	7.98
CDY68896	Canola	cytosol	8.47	7.72
CDY10302	Canola	extracellular	1.63	7.69
CDX85007	Canola	cytosol, plastid	15.64	4.78
CDY56079	Canola	plastid	1.63	3.73
CDY32775	Canola	cytosol	0.33	1.18
CDX79518	Canola	cytosol	0.0	0.0

Protein Annotations

Gene3D:1.10.560.10	Gene3D:3.50.7.10	MapMan:35.1	GO:A0A078K2H8	UniProt:A0A078K2H8	EnsemblPlants:CDY72107
ProteinID:CDY72107	ProteinID:CDY72107.1	InterPro:Chaprnin_Cpn60	InterPro:Cpn60/TCP-1	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0008150	GO:GO:0009987	GO:GO:0042026	InterPro:GROEL-like_equatorial_sf	EnsemblPlantsGene:GSBRNA2T00023733001	InterPro:GroEL-like_apical_dom_sf
InterPro:IPR027409	InterPro:IPR027413	PFAM:PF00118	PRINTS:PR00298	PANTHER:PTHR11353	PANTHER:PTHR11353:SF85
SUPFAM:SSF48592	UniParc:UPI0004EDF8C9	:	:	:	:

Description

BnaCnng76000DBnaCnng76000D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078K2H8]

Coordinates

chrLK048968:-:59..1816

Molecular Weight (calculated)

33106.5 Da

IEP (calculated)

9.599

GRAVY (calculated)

0.007

Length

307 amino acids

Sequence
(BLAST)

001: MYRLISSIAS KARVARNCTS QIGSRLSSTR NYAAKDIRFG VEGRALMLRG VEELADAVKV TMGPKGRNVI IEQSWGAPKV TKDGVTVAKS IEFKDGVKNV
101: GASLVKQVAN ATNDVAGDGT TCATVLTRAI FTEGCKSVAA GMNAMDLRRG IKLAVDTVVT NLKSRARMIS TSEEIAQVGT ISANGDREIG ELIAKAMESV
201: GKEGVITIQD GKTLFNELEV VEGMKIDRGY ISPYFITNQK NQKCELEDPL ILIHEKKISN LNSMVKVLEL ALKSQRSLLI VAEDLESDAL AVLILNKLRA
301: GIKVFAC

Best Arabidopsis Sequence Match ( AT2G33210.1 )
(BLAST)

001: MYRLVSNVAS KARIARKCTS QIGSRLNSTR NYAAKDIRFG VEARALMLRG VEDLADAVKV TMGPKGRNVI IEQSWGAPKV TKDGVTVAKS IEFKDRIKNV
101: GASLVKQVAN ATNDVAGDGT TCATVLTRAI FTEGCKSVAA GMNAMDLRRG IKLAVDTVVT NLQSRARMIS TSEEIAQVGT ISANGDREIG ELIAKAMETV
201: GKEGVITIQD GKTLFNELEV VEGMKIDRGY ISPYFITNPK TQKCELEDPL ILIHEKKISN INAMVKVLEL ALKKQRPLLI VAEDVESDAL ATLILNKLRA
301: NIKVCAVKAP GFGENRKANL HDLAALTGAQ VITEELGMNL DNIDLSMFGN CKKVTVSKDD TVVLDGAGDK QAIGERCEQI RSMVEASTSD YDKEKLQERL
401: AKLSGGVAVL KIGGASETEV SEKKDRVTDA LNATKAAVEE GIVPGGGVAL LYASKELEKL STANFDQKIG VQIIQNALKT PVYTIASNAG VEGAVVVGKL
501: LEQDNPDLGY DAAKGEYVDM IKAGIIDPLK VIRTALVDAA SVSSLLTTTE AVVTEIPTKE VASPGMGGGG MGGMGGMGGM GGMGF

Arabidopsis Description

HSP60-2Chaperonin CPN60-like 1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8L7B5]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.