CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d016540_P001	Maize	cytosol	16.82	70.19
CDY43988	Canola	cytosol	78.11	65.95
Zm00001d053279_P001	Maize	mitochondrion	20.74	57.32
CDX72433	Canola	endoplasmic reticulum	41.47	56.96
Zm00001d046709_P001	Maize	mitochondrion	20.51	56.69
TraesCS6B01G012000.1	Wheat	cytosol	52.53	55.47
CDX75715	Canola	cytosol	69.12	53.29
CDX82537	Canola	plastid	71.89	53.15
AT3G13470.1	Thale cress	plastid	72.12	52.52
Zm00001d037526_P001	Maize	plastid	21.2	51.98
CDX75713	Canola	plastid	70.97	51.94
HORVU7Hr1G006490.2	Barley	cytosol	65.67	51.44
CDY08245	Canola	plastid	70.28	50.83
EER89076	Sorghum	plastid	67.51	50.6
PGSC0003DMT400061700	Potato	extracellular	69.59	50.42
Zm00001d035937_P001	Maize	plastid	67.05	50.26
Solyc01g028810.2.1	Tomato	plastid	69.35	50.25
KRH43861	Soybean	plastid	68.43	50.17
KRH13605	Soybean	nucleus	67.97	49.92
CDY11918	Canola	plastid	67.97	49.58
CDY32855	Canola	plastid	67.74	49.49
Zm00001d045544_P002	Maize	plastid	67.74	49.0
CDY36809	Canola	plastid	68.43	48.93
CDY26100	Canola	plastid	70.28	48.57
GSMUA_Achr3P27620_001	Banana	plastid	68.43	48.53
GSMUA_Achr9P23240_001	Banana	plastid	68.43	48.53
HORVU4Hr1G076680.1	Barley	cytosol	22.12	48.48
TraesCS6B01G011800.1	Wheat	plastid	66.13	48.4
Os06t0114000-02	Rice	plastid	66.82	48.25
TraesCS6A01G006400.1	Wheat	golgi	66.36	48.16
TraesCS6D01G009100.1	Wheat	golgi	66.36	48.16
TraesCS6B01G012100.3	Wheat	plastid	66.13	47.83
Os02t0102900-01	Rice	plastid	65.67	47.66
TraesCS4A01G452700.2	Wheat	plastid	64.06	47.6
HORVU5Hr1G074160.1	Barley	cytosol	21.2	47.18
KXG29249	Sorghum	plastid	65.44	47.02
HORVU2Hr1G107410.2	Barley	cytosol	21.66	47.0
TraesCS7A01G036200.2	Wheat	golgi	66.36	46.45
TraesCS7D01G032800.1	Wheat	cytosol	66.36	45.79
Zm00001d054089_P002	Maize	plastid	64.98	45.7
TraesCS6B01G039300.2	Wheat	plastid	61.98	44.98
TraesCS6A01G028100.1	Wheat	plastid	61.52	44.65
TraesCS6D01G031400.1	Wheat	plastid	61.29	44.48
HORVU6Hr1G005220.3	Barley	plastid	61.06	44.31
CDY02438	Canola	cytosol	70.28	43.76
GSMUA_Achr11P...	Banana	plastid	67.51	42.1
HORVU6Hr1G000180.2	Barley	plastid	62.67	41.78
HORVU4Hr1G066820.2	Barley	cytosol	21.43	39.57
CDY20555	Canola	plastid	54.15	38.72
CDY66193	Canola	plastid	53.92	38.55
CDY10557	Canola	endoplasmic reticulum, plastid	70.51	36.91
CDY56074	Canola	plastid	38.71	35.37
CDY68896	Canola	cytosol	26.73	34.42
CDX86994	Canola	mitochondrion, plastid	52.53	32.48
CDY10302	Canola	extracellular	4.61	30.77
CDY02601	Canola	plastid	40.55	30.45
CDY47184	Canola	plastid	40.55	30.45
CDX71396	Canola	plastid	37.1	30.43
CDX83280	Canola	plastid	40.55	30.24
CDY30514	Canola	plastid	40.55	30.09
CDY31190	Canola	plastid	40.32	29.86
CDY04527	Canola	plastid	40.78	29.7
CDY59050	Canola	cytosol	22.58	28.99
CDX79518	Canola	cytosol	13.36	28.71
CDX93002	Canola	mitochondrion	35.71	28.18
CDX82514	Canola	mitochondrion	37.1	28.15
CDX77147	Canola	plastid	40.32	28.14
CDX94835	Canola	mitochondrion	37.33	28.08
CDX75733	Canola	mitochondrion	36.87	27.97
CDY17152	Canola	mitochondrion	36.87	27.87
CDX84697	Canola	mitochondrion	35.94	27.71
CDY19471	Canola	mitochondrion	37.56	27.49
CDY72107	Canola	mitochondrion	17.97	25.41
CDY32775	Canola	cytosol	4.84	24.71
CDY40825	Canola	endoplasmic reticulum, vacuole	11.75	23.94
CDY66712	Canola	mitochondrion	32.72	23.55
CDY37741	Canola	mitochondrion	30.41	21.6
CDY59049	Canola	mitochondrion	9.45	18.81
CDY31193	Canola	plastid	10.14	18.57
CDX85007	Canola	cytosol, plastid	39.63	17.13
CDY56079	Canola	plastid	4.38	14.18
Os02t0103100-01	Rice	plasma membrane, vacuole	0.23	0.68

Protein Annotations

Gene3D:1.10.560.10	Gene3D:3.30.260.10	Gene3D:3.50.7.10	MapMan:35.1	GO:A0A078GAZ5	UniProt:A0A078GAZ5
EnsemblPlants:CDY23605	ProteinID:CDY23605	ProteinID:CDY23605.1	InterPro:Chaprnin_Cpn60	ncoils:Coil	InterPro:Cpn60/TCP-1
GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0009987	GO:GO:0042026	InterPro:GROEL-like_equatorial_sf
EnsemblPlantsGene:GSBRNA2T00023820001	InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409	InterPro:IPR027410	InterPro:IPR027413	PFAM:PF00118
PRINTS:PR00298	PANTHER:PTHR11353	PANTHER:PTHR11353:SF164	SUPFAM:SSF48592	SUPFAM:SSF52029	InterPro:TCP-1-like_intermed_sf
UniParc:UPI0004EC1148	SEG:seg	:	:	:	:

Description

BnaC05g39890DBnaC05g39890D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GAZ5]

Coordinates

chrLK032145:+:350909..352907

Molecular Weight (calculated)

46771.3 Da

IEP (calculated)

4.531

GRAVY (calculated)

-0.358

Length

434 amino acids

Sequence
(BLAST)

001: MDAFERKYGS HGVNVTSEEE DFEEPVENIG WKHDRQAASK TSDLAGHGVG LAQGFIDECA KVVAAGANPA LISIGIEKTE KALVNELNIM SKGSNAGRND
101: PEAGSMIAEA MSKVGKNGVV VIDEGKTAEN KVYVVEGMQF EPGYMSPYFI TDHETERMCV EYDHFKPLLV DHKITNAKDL DGVLEDAIKG RDPIIIIAED
201: FEQEAELWNV AAVKAPGGSR ELKSKYFDDI AILTGATVIR EEDGLSLDKA GKEVLGNSYK VVLTKEMTTI VGDGTTHEAV NKRVAEIKNL IEQAEQGYEK
301: ETLNERLAKL SGGVAVIQVG GQTETERREK KLKFEAALNG TKGAIEEGTV VGGGCTFLGL ADKVDPIKDT LENEEEKIGA DIVKKALSNA GEGGSVVSEE
401: VVRGSLEHAF STAKWFLMPD VKGPEARKPV DISG

Best Arabidopsis Sequence Match ( AT1G55490.1 )
(BLAST)

001: MASTFTATSS IGSMVAPNGH KSDKKLISKL SSSSFGRRQS VCPRPRRSSS AIVCAAKELH FNKDGTTIRR LQAGVNKLAD LVGVTLGPKG RNVVLESKYG
101: SPRIVNDGVT VAREVELEDP VENIGAKLVR QAAAKTNDLA GDGTTTSVVL AQGFIAEGVK VVAAGANPVL ITRGIEKTAK ALVTELKKMS KEVEDSELAD
201: VAAVSAGNND EIGNMIAEAM SKVGRKGVVT LEEGKSAENN LYVVEGMQFD RGYISPYFVT DSEKMSVEFD NCKLLLVDKK ITNARDLVGV LEDAIRGGYP
301: ILIIAEDIEQ EALATLVVNK LRGTLKIAAL RAPGFGERKS QYLDDIAILT GATVIREEVG LSLDKAGKEV LGNASKVVLT KETSTIVGDG STQDAVKKRV
401: TQIKNLIEQA EQDYEKEKLN ERIAKLSGGV AVIQVGAQTE TELKEKKLRV EDALNATKAA VEEGIVVGGG CTLLRLASKV DAIKATLDND EEKVGADIVK
501: RALSYPLKLI AKNAGVNGSV VSEKVLSNDN VKFGYNAATG KYEDLMAAGI IDPTKVVRCC LEHAASVAKT FLMSDCVVVE IKEPEPVPVG NPMDNSGYGY

Arabidopsis Description

CPN60B1LEN1 [Source:UniProtKB/TrEMBL;Acc:A0A178W724]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.