Factsheet for TraesCS6B01G011800.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

plastid: 22160430

msms PMID: 22160430 doi

AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G012000.1	Wheat	cytosol	68.47	98.78
TraesCS6A01G006400.1	Wheat	golgi	97.98	97.16
TraesCS6D01G009100.1	Wheat	golgi	97.13	96.32
TraesCS6B01G012100.3	Wheat	plastid	96.96	95.83
Os02t0102900-01	Rice	plastid	90.05	89.3
KXG29249	Sorghum	plastid	90.39	88.74
Zm00001d054089_P002	Maize	plastid	89.71	86.22
TraesCS6B01G039300.2	Wheat	plastid	83.81	83.11
KRH43861	Soybean	plastid	81.79	81.93
GSMUA_Achr9P23240_001	Banana	plastid	84.49	81.86
AT3G13470.1	Thale cress	plastid	82.12	81.71
GSMUA_Achr3P27620_001	Banana	plastid	84.32	81.7
Bra001507.1-P	Field mustard	plastid	81.28	81.69
CDX82537	Canola	plastid	80.78	81.6
KRH13605	Soybean	nucleus	80.94	81.22
CDX75715	Canola	cytosol	77.07	81.17
VIT_06s0004g00240.t01	Wine grape	plastid	82.97	80.92
PGSC0003DMT400061700	Potato	extracellular	81.62	80.8
Solyc01g028810.2.1	Tomato	plastid	81.62	80.8
HORVU6Hr1G000180.2	Barley	plastid	88.7	80.8
CDX75713	Canola	plastid	80.78	80.78
AT1G55490.3	Thale cress	plastid	81.45	80.5
AT5G56500.2	Thale cress	plastid	80.94	80.4
CDY32855	Canola	plastid	80.44	80.3
Bra028922.1-P	Field mustard	plastid	79.93	80.2
VIT_09s0002g03930.t01	Wine grape	plastid	82.12	79.97
CDY08245	Canola	plastid	80.61	79.67
CDY11918	Canola	plastid	79.76	79.5
Bra011919.1-P	Field mustard	plastid	80.94	78.95
CDY36809	Canola	plastid	79.43	77.59
CDY26100	Canola	plastid	80.61	76.11
Solyc03g120850.2.1	Tomato	plastid	77.4	75.87
PGSC0003DMT400006501	Potato	plastid	77.23	75.7
CDX72433	Canola	endoplasmic reticulum	37.27	69.94
Bra030858.1-P	Field mustard	cytosol	80.78	69.52
CDY02438	Canola	cytosol	80.44	68.44
CDY23605	Canola	cytosol	48.4	66.13
CDY32775	Canola	cytosol	9.44	65.88
TraesCS2B01G328500.3	Wheat	plastid	58.18	58.28
CDY56074	Canola	plastid	46.54	58.11
CDY10557	Canola	endoplasmic reticulum, plastid	80.61	57.66
CDY43988	Canola	cytosol	48.74	56.23
Bra027431.1-P	Field mustard	cytosol	48.9	55.88
CDY10302	Canola	extracellular	5.4	49.23
TraesCS5B01G563900.2	Wheat	plastid	47.22	47.62
CDX86994	Canola	mitochondrion, plastid	54.97	46.44
TraesCS1B01G162300.1	Wheat	mitochondrion	43.84	45.3
TraesCS4B01G307700.1	Wheat	mitochondrion	43.34	44.62
TraesCS1B01G378000.1	Wheat	mitochondrion	42.5	43.22
CDY40825	Canola	endoplasmic reticulum, vacuole	14.84	41.31
TraesCS5B01G368900.1	Wheat	plastid	38.79	38.98
TraesCS4B01G266200.1	Wheat	cytosol	22.09	31.57
CDX85007	Canola	cytosol, plastid	42.83	25.3
Os02t0103100-01	Rice	plasma membrane, vacuole	0.34	1.37

Protein Annotations

MapMan:1.1.8.1.6.2.2	Gene3D:1.10.560.10	MapMan:1.2.1.2.1.2	MapMan:19.1.7.1	Gene3D:3.30.260.10	Gene3D:3.50.7.10
InterPro:Chaperonin_Cpn60_CS	InterPro:Chaprnin_Cpn60	ncoils:Coil	InterPro:Cpn60/TCP-1	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006457	GO:GO:0008150	GO:GO:0009987	GO:GO:0042026	InterPro:GROEL-like_equatorial_sf	InterPro:GroEL-like_apical_dom_sf
InterPro:IPR027409	InterPro:IPR027410	InterPro:IPR027413	HAMAP:MF_00600	PFAM:PF00118	PRINTS:PR00298
ScanProsite:PS00296	PANTHER:PTHR11353	PANTHER:PTHR11353:SF102	SUPFAM:SSF48592	SUPFAM:SSF52029	SUPFAM:SSF54849
InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02348	EnsemblPlantsGene:TraesCS6B01G011800	EnsemblPlants:TraesCS6B01G011800.1	TIGR:cd03344	SEG:seg

Description

No Description!

Coordinates

chr6B:+:6849093..6853009

Molecular Weight (calculated)

63110.0 Da

IEP (calculated)

5.799

GRAVY (calculated)

-0.121

Length

593 amino acids

Sequence
(BLAST)

001: MASPFGGAST CGLKAAAPSG FTARKQLSLV SPLLVSLPQR ARPGRRCSFR VNAAKELYFN KDGSAIKKLQ LADLVGVTLG PKGRNVVLES KYGSPRIVND
101: GVTVAKEVEL EDPVENIGAK LVRQAAAKTN DLAGDGTTTS VILAQGMIAE GVKIVAAGAN PVQIARGIEK TTKALVGELR KMSKEVEDSE LADVAAVSAG
201: NNYEIGNMIA DAMSKVGRQG VVTLEEGKSA ENNLYVVEGM QFDRGYISPY FVTDSEKMSV EYENCKLLLV DKKINNARDL ITLLEDAIKG GHPILIIAED
301: IEQEALATLV VNRLRGALKI AAIKAPGFGE RKSQYLDDIA TLTGGTVIRE EIGLSLDKAD KEVLGNAAKV VITKDSTTIV GDGTTQEEVT KRVTQIRNQI
401: EASEQEYEKE KLNERIAKLS GGVAVIQVGA QTETELKEKK LRVEDALNAT KAAVEEGIVV GGGCTLLRLA SKVDAIKETL ENDEQKVGAE IVRKSLSYPL
501: KLIAKNAGVN GSVVPKKVLV NDNFRYGYNA ATGNYEDLMA AGIIDPTKVV RCCLEHAASV AKTFITSDAV VVDIKESEKA PAANPMAGSG YGF

Best Arabidopsis Sequence Match ( AT1G55490.1 )
(BLAST)

001: MASTFTATSS IGSMVAPNGH KSDKKLISKL SSSSFGRRQS VCPRPRRSSS AIVCAAKELH FNKDGTTIRR LQAGVNKLAD LVGVTLGPKG RNVVLESKYG
101: SPRIVNDGVT VAREVELEDP VENIGAKLVR QAAAKTNDLA GDGTTTSVVL AQGFIAEGVK VVAAGANPVL ITRGIEKTAK ALVTELKKMS KEVEDSELAD
201: VAAVSAGNND EIGNMIAEAM SKVGRKGVVT LEEGKSAENN LYVVEGMQFD RGYISPYFVT DSEKMSVEFD NCKLLLVDKK ITNARDLVGV LEDAIRGGYP
301: ILIIAEDIEQ EALATLVVNK LRGTLKIAAL RAPGFGERKS QYLDDIAILT GATVIREEVG LSLDKAGKEV LGNASKVVLT KETSTIVGDG STQDAVKKRV
401: TQIKNLIEQA EQDYEKEKLN ERIAKLSGGV AVIQVGAQTE TELKEKKLRV EDALNATKAA VEEGIVVGGG CTLLRLASKV DAIKATLDND EEKVGADIVK
501: RALSYPLKLI AKNAGVNGSV VSEKVLSNDN VKFGYNAATG KYEDLMAAGI IDPTKVVRCC LEHAASVAKT FLMSDCVVVE IKEPEPVPVG NPMDNSGYGY

Arabidopsis Description

CPN60B1LEN1 [Source:UniProtKB/TrEMBL;Acc:A0A178W724]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.