Factsheet for TraesCS6B01G012000.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX72433	Canola	endoplasmic reticulum	54.5	70.89
TraesCS6B01G011800.1	Wheat	plastid	98.78	68.47
TraesCS6A01G006400.1	Wheat	golgi	99.03	68.06
TraesCS6B01G012100.3	Wheat	plastid	98.54	67.5
TraesCS6D01G009100.1	Wheat	golgi	98.05	67.39
CDY32775	Canola	cytosol	13.63	65.88
Os02t0102900-01	Rice	plastid	94.4	64.88
KXG29249	Sorghum	plastid	93.92	63.91
Zm00001d054089_P002	Maize	plastid	92.94	61.91
CDX75715	Canola	cytosol	84.67	61.81
Bra001507.1-P	Field mustard	plastid	86.37	60.17
CDX82537	Canola	plastid	85.64	59.97
GSMUA_Achr3P27620_001	Banana	plastid	89.05	59.8
AT3G13470.1	Thale cress	plastid	86.62	59.73
KRH43861	Soybean	plastid	85.89	59.63
KRH13605	Soybean	nucleus	85.64	59.56
GSMUA_Achr9P23240_001	Banana	plastid	88.56	59.48
TraesCS6B01G039300.2	Wheat	plastid	86.37	59.36
Solyc01g028810.2.1	Tomato	plastid	86.13	59.1
CDX75713	Canola	plastid	85.16	59.02
AT1G55490.3	Thale cress	plastid	86.13	59.0
PGSC0003DMT400061700	Potato	extracellular	85.89	58.93
Bra028922.1-P	Field mustard	plastid	84.67	58.88
VIT_09s0002g03930.t01	Wine grape	plastid	87.1	58.78
AT5G56500.2	Thale cress	plastid	85.16	58.63
CDY32855	Canola	plastid	84.43	58.42
CDY08245	Canola	plastid	85.16	58.33
VIT_06s0004g00240.t01	Wine grape	plastid	86.13	58.22
CDY11918	Canola	plastid	84.18	58.15
Bra011919.1-P	Field mustard	plastid	85.64	57.89
CDY36809	Canola	plastid	84.18	57.0
Solyc03g120850.2.1	Tomato	plastid	82.97	56.36
PGSC0003DMT400006501	Potato	plastid	82.97	56.36
HORVU6Hr1G000180.2	Barley	plastid	89.05	56.22
CDY26100	Canola	plastid	84.91	55.57
CDY23605	Canola	cytosol	55.47	52.53
Bra030858.1-P	Field mustard	cytosol	85.16	50.8
CDY02438	Canola	cytosol	84.67	49.93
CDX86994	Canola	mitochondrion, plastid	78.59	46.01
CDY43988	Canola	cytosol	56.45	45.14
Bra027431.1-P	Field mustard	cytosol	56.45	44.7
CDY10302	Canola	extracellular	6.81	43.08
CDY10557	Canola	endoplasmic reticulum, plastid	84.91	42.1
TraesCS2B01G328500.3	Wheat	plastid	60.58	42.06
CDY56074	Canola	plastid	40.15	34.74
TraesCS5B01G563900.2	Wheat	plastid	49.63	34.69
TraesCS1B01G162300.1	Wheat	mitochondrion	46.96	33.62
TraesCS4B01G307700.1	Wheat	mitochondrion	46.72	33.33
TraesCS1B01G378000.1	Wheat	mitochondrion	44.28	31.22
TraesCS4B01G266200.1	Wheat	cytosol	30.17	29.88
TraesCS5B01G368900.1	Wheat	plastid	41.36	28.81
CDY40825	Canola	endoplasmic reticulum, vacuole	12.65	24.41
CDX85007	Canola	cytosol, plastid	53.53	21.91
Os02t0103100-01	Rice	plasma membrane, vacuole	0.49	1.37

Protein Annotations

MapMan:1.1.8.1.6.2.2	Gene3D:1.10.560.10	MapMan:1.2.1.2.1.2	MapMan:19.1.7.1	Gene3D:3.30.260.10	Gene3D:3.50.7.10
InterPro:Chaperonin_Cpn60_CS	InterPro:Chaprnin_Cpn60	ncoils:Coil	InterPro:Cpn60/TCP-1	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006457	GO:GO:0008150	GO:GO:0009987	GO:GO:0042026	InterPro:GROEL-like_equatorial_sf	InterPro:GroEL-like_apical_dom_sf
InterPro:IPR027409	InterPro:IPR027410	InterPro:IPR027413	PFAM:PF00118	ScanProsite:PS00296	PANTHER:PTHR11353
PANTHER:PTHR11353:SF102	SUPFAM:SSF48592	SUPFAM:SSF52029	SUPFAM:SSF54849	InterPro:TCP-1-like_intermed_sf	EnsemblPlantsGene:TraesCS6B01G012000
EnsemblPlants:TraesCS6B01G012000.1	TIGR:cd03344	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr6B:-:7099159..7102019

Molecular Weight (calculated)

44204.9 Da

IEP (calculated)

4.551

GRAVY (calculated)

-0.136

Length

411 amino acids

Sequence
(BLAST)

001: MLQVEDSELA DVAAVSAGNN YEIGNMIADA MSKVGRQGVV TLEEGKSAEN NLYVVEGMQF DRGYISPYFV TDSEKMSVEY ENCKLLLVDK KINNARDLIT
101: LLEDAIKGGY PILIIAEDIE QEALATLVVN RLRGALKIAA IKAPGFGERK SQYLDDIATL TGGTVIREEI GLSLDKADKE VLGNAAKVVI TKDSTTIVGD
201: GTTQEEVTKR VTQIKNQIEA SEQEYEKEKL NERIAKLSGG VAVIQVGAQT ETELKEKKLR VEDALNATKA AVEEGIVVGG GCTLLRLASK VDAIKETLEN
301: DEQKVGAEIV RKSLSYPLKL IAKNAGVNGS VVTEKVLVND NFRYGYNAAT GNYEDLMAAG IIDPTKVVRC CLEHAASVAK TFITSDAVVV DIKESEKAPA
401: ANPMAGSGYG F

Best Arabidopsis Sequence Match ( AT1G55490.1 )
(BLAST)

001: MASTFTATSS IGSMVAPNGH KSDKKLISKL SSSSFGRRQS VCPRPRRSSS AIVCAAKELH FNKDGTTIRR LQAGVNKLAD LVGVTLGPKG RNVVLESKYG
101: SPRIVNDGVT VAREVELEDP VENIGAKLVR QAAAKTNDLA GDGTTTSVVL AQGFIAEGVK VVAAGANPVL ITRGIEKTAK ALVTELKKMS KEVEDSELAD
201: VAAVSAGNND EIGNMIAEAM SKVGRKGVVT LEEGKSAENN LYVVEGMQFD RGYISPYFVT DSEKMSVEFD NCKLLLVDKK ITNARDLVGV LEDAIRGGYP
301: ILIIAEDIEQ EALATLVVNK LRGTLKIAAL RAPGFGERKS QYLDDIAILT GATVIREEVG LSLDKAGKEV LGNASKVVLT KETSTIVGDG STQDAVKKRV
401: TQIKNLIEQA EQDYEKEKLN ERIAKLSGGV AVIQVGAQTE TELKEKKLRV EDALNATKAA VEEGIVVGGG CTLLRLASKV DAIKATLDND EEKVGADIVK
501: RALSYPLKLI AKNAGVNGSV VSEKVLSNDN VKFGYNAATG KYEDLMAAGI IDPTKVVRCC LEHAASVAKT FLMSDCVVVE IKEPEPVPVG NPMDNSGYGY

Arabidopsis Description

CPN60B1LEN1 [Source:UniProtKB/TrEMBL;Acc:A0A178W724]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.