CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra028922.1-P	Field mustard	plastid	97.98	98.65
AT5G56500.2	Thale cress	plastid	96.81	96.48
CDY36809	Canola	plastid	97.98	96.05
CDY32855	Canola	plastid	95.8	95.96
PGSC0003DMT400061700	Potato	extracellular	85.88	85.31
Solyc01g028810.2.1	Tomato	plastid	85.88	85.31
KRH43861	Soybean	plastid	84.54	84.97
KRH13605	Soybean	nucleus	84.37	84.94
CDX82537	Canola	plastid	83.7	84.84
CDX75713	Canola	plastid	84.2	84.49
TraesCS6B01G012000.1	Wheat	cytosol	58.15	84.18
CDY08245	Canola	plastid	84.54	83.83
Zm00001d035937_P001	Maize	plastid	81.18	83.42
HORVU4Hr1G076680.1	Barley	cytosol	27.73	83.33
CDX75715	Canola	cytosol	78.66	83.13
EER89076	Sorghum	plastid	80.84	83.07
HORVU5Hr1G074160.1	Barley	cytosol	26.89	82.05
HORVU2Hr1G107410.2	Barley	cytosol	27.39	81.5
HORVU7Hr1G006490.2	Barley	cytosol	75.8	81.41
Os06t0114000-02	Rice	plastid	82.18	81.36
TraesCS4A01G452700.2	Wheat	plastid	79.83	81.34
GSMUA_Achr3P27620_001	Banana	plastid	83.19	80.88
TraesCS6A01G006400.1	Wheat	golgi	81.18	80.77
GSMUA_Achr9P23240_001	Banana	plastid	83.03	80.72
Zm00001d045544_P002	Maize	plastid	81.34	80.67
Os02t0102900-01	Rice	plastid	80.67	80.27
TraesCS6D01G009100.1	Wheat	golgi	80.67	80.27
CDY26100	Canola	plastid	84.71	80.25
CDY32775	Canola	cytosol	11.43	80.0
TraesCS6B01G011800.1	Wheat	plastid	79.5	79.76
KXG29249	Sorghum	plastid	80.84	79.64
TraesCS6B01G012100.3	Wheat	plastid	80.0	79.33
TraesCS7A01G036200.2	Wheat	golgi	81.18	77.9
Zm00001d054089_P002	Maize	plastid	79.66	76.82
TraesCS7D01G032800.1	Wheat	cytosol	81.18	76.79
TraesCS6B01G039300.2	Wheat	plastid	74.79	74.41
TraesCS6A01G028100.1	Wheat	plastid	74.62	74.25
TraesCS6D01G031400.1	Wheat	plastid	74.45	74.08
HORVU6Hr1G005220.3	Barley	plastid	74.12	73.75
Zm00001d016540_P001	Maize	cytosol	12.77	73.08
CDY02438	Canola	cytosol	85.04	72.6
CDX72433	Canola	endoplasmic reticulum	37.98	71.52
GSMUA_Achr11P...	Banana	plastid	83.36	71.26
Zm00001d053279_P001	Maize	mitochondrion	18.32	69.43
HORVU6Hr1G000180.2	Barley	plastid	74.79	68.36
Zm00001d046709_P001	Maize	mitochondrion	17.98	68.15
HORVU4Hr1G066820.2	Barley	cytosol	26.89	68.09
CDY23605	Canola	cytosol	49.58	67.97
Zm00001d037526_P001	Maize	plastid	18.66	62.71
CDY10557	Canola	endoplasmic reticulum, plastid	85.21	61.16
CDY56074	Canola	plastid	48.4	60.63
CDY66193	Canola	plastid	61.34	60.13
CDY20555	Canola	plastid	61.34	60.13
CDY43988	Canola	cytosol	49.24	57.0
CDY10302	Canola	extracellular	6.05	55.38
CDY68896	Canola	cytosol	28.91	51.04
CDX83280	Canola	plastid	48.74	49.83
CDY30514	Canola	plastid	48.91	49.74
CDY31190	Canola	plastid	48.91	49.66
CDX79518	Canola	cytosol	16.81	49.51
CDY04527	Canola	plastid	48.91	48.83
CDX71396	Canola	plastid	42.35	47.64
CDX86994	Canola	mitochondrion, plastid	55.63	47.15
CDX94835	Canola	mitochondrion	45.38	46.79
CDX77147	Canola	plastid	48.91	46.78
CDX93002	Canola	mitochondrion	43.03	46.55
CDY59050	Canola	cytosol	26.39	46.45
CDX84697	Canola	mitochondrion	43.53	46.0
CDY17152	Canola	mitochondrion	44.37	45.99
CDY19471	Canola	mitochondrion	45.38	45.53
CDY72107	Canola	mitochondrion	23.03	44.63
CDY47184	Canola	plastid	43.03	44.29
CDY02601	Canola	plastid	42.69	43.94
CDX82514	Canola	mitochondrion	41.34	43.01
CDX75733	Canola	mitochondrion	41.18	42.83
CDY40825	Canola	endoplasmic reticulum, vacuole	14.96	41.78
CDY31193	Canola	plastid	16.47	41.35
CDY66712	Canola	mitochondrion	36.64	36.15
CDY59049	Canola	mitochondrion	13.11	35.78
CDY37741	Canola	mitochondrion	35.63	34.7
CDX85007	Canola	cytosol, plastid	45.21	26.79
CDY56079	Canola	plastid	5.21	23.13
Os02t0103100-01	Rice	plasma membrane, vacuole	0.34	1.37

Protein Annotations

MapMan:1.1.8.1.6.2.2	Gene3D:1.10.560.10	MapMan:1.2.1.2.1.2	MapMan:19.1.7.1	Gene3D:3.30.260.10	Gene3D:3.50.7.10
GO:A0A078FIJ5	UniProt:A0A078FIJ5	EnsemblPlants:CDY11918	ProteinID:CDY11918	ProteinID:CDY11918.1	InterPro:Chaperonin_Cpn60_CS
InterPro:Chaprnin_Cpn60	ncoils:Coil	InterPro:Cpn60/TCP-1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006457
GO:GO:0008150	GO:GO:0009987	GO:GO:0042026	InterPro:GROEL-like_equatorial_sf	EnsemblPlantsGene:GSBRNA2T00060762001	InterPro:GroEL-like_apical_dom_sf
InterPro:IPR027409	InterPro:IPR027410	InterPro:IPR027413	HAMAP:MF_00600	PFAM:PF00118	PRINTS:PR00298
ScanProsite:PS00296	PANTHER:PTHR11353	PANTHER:PTHR11353:SF164	SUPFAM:SSF48592	SUPFAM:SSF52029	SUPFAM:SSF54849
InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02348	UniParc:UPI0004EF2EE8	SEG:seg	:	:

Description

BnaC03g13440DBnaC03g13440D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FIJ5]

Coordinates

chrLK032015:-:452380..455674

Molecular Weight (calculated)

62988.7 Da

IEP (calculated)

5.417

GRAVY (calculated)

-0.093

Length

595 amino acids

Sequence
(BLAST)

001: MAPTFSATSS MGSSLAPPAS RLSSLVSSNS FGKSQAFAQR KARFPKIYAA KQLHFNKDGT AIRKLQAGVN KLADLVGVTL GPKGRNVVLE SKYGSPRIVN
101: DGVTVAREVE LEDPVENIGA KLVRQAASKT NDLAGDGTTT SVVLAQGLIT EGVKVVAAGA NPVLITRGIE KTTKALVAEL KKMSKEVEDS ELADVAAVSA
201: GNNYEVGNMI AEAMAKVGRK GVVTLEEGKS AENSLYVVEG MQFDRGYISP YFVTDSEKMC AEYENCKMFL VDKKITNARD IISILEDAIK GGYPLLIIAE
301: DIEQEALATL VVNKLRGTIK VAALKAPGFG ERKSQYLDDI AALTGATVIR EEVGLQLEKV GAEVLGNAGK VVLTKDTTTI VGDGSTEEVV KKRVEQIKNL
401: IEAAEQDYEK EKLNERIAKL SGGVAVIQVG AQTETELKEK KLRVEDALNA TKAAVEEGIV VGGGCTLLRL ASKVDAVKES LANDEEKVGA DIVKKALSYP
501: LKLIAKNAGV NGSVVSEKVL SSDDPKHGYN AATGKYEDLM AAGIIDPTKV VRCCLEHASS VAKTFLMSDC VVVEINEPES AAPAGNPMGN SGYGF

Best Arabidopsis Sequence Match ( AT5G56500.1 )
(BLAST)

001: MASTFSATSS MGSSLAPPSN RLSSFVSISS SSFGRTQSIA QRKARFPKIY AAKQLHFNKD GTAIKKLQAG VNKLADLVGV TLGPKGRNVV LESKYGSPRI
101: VNDGVTVARE VELEDPVENI GAKLVRQAAS KTNDLAGDGT TTSVVLAQGL IAEGVKVVAA GANPVLITRG IEKTTKALVA ELKKMSKEVE DSELADVAAV
201: SAGNNYEVGN MIAEAMAKVG RKGVVTLEEG KSAENSLYVV EGMQFDRGYI SPYFVTDSEK MCAEYENCKL FLVDKKITNA RDIISILEDA IKGGYPLLII
301: AEDIEQEPLA TLVVNKLRGT IKVAALKAPG FGERKSQYLD DIAALTGATV IREEVGLQLE KVGPEVLGNA GKVVLTKDTT TIVGDGSTEE VVKKRVEQIK
401: NLIEAAEQDY EKEKLNERIA KLSGGVAVIQ VGAQTETELK EKKLRVEDAL NATKAAVEEG IVVGGGCTLL RLASKVDAIK ETLANDEEKV GADIVKKALS
501: YPLKLIAKNA GVNGSVVSEK VLSSDNPKHG YNAATGKYED LMAAGIIDPT KVVRCCLEHA SSVAKTFLMS DCVVVEIKEP ESAAPAGNPM DNSGYGF

Arabidopsis Description

CPN60B3Chaperonin 60 subunit beta 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:C0Z361]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.