Factsheet for Zm00001d053279_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, plastid
iPSORT:	plastid
MultiLoc:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d046709_P001	Maize	mitochondrion	96.18	96.18
Zm00001d016540_P001	Maize	cytosol	62.42	94.23
Zm00001d037526_P001	Maize	plastid	93.63	83.05
Zm00001d017567_P001	Maize	cytosol	69.43	66.06
CDX72433	Canola	endoplasmic reticulum	64.33	31.96
EER89076	Sorghum	plastid	84.08	22.8
Zm00001d035937_P001	Maize	plastid	83.44	22.63
Os06t0114000-02	Rice	plastid	84.08	21.96
HORVU7Hr1G006490.2	Barley	cytosol	77.07	21.84
Zm00001d045544_P002	Maize	plastid	83.44	21.83
TraesCS4A01G452700.2	Wheat	plastid	78.98	21.23
CDX75715	Canola	cytosol	74.52	20.78
CDY23605	Canola	cytosol	57.32	20.74
Zm00001d051252_P001	Maize	cytosol	26.11	20.0
TraesCS7A01G036200.2	Wheat	golgi	78.98	20.0
Bra001507.1-P	Field mustard	plastid	74.52	19.83
GSMUA_Achr9P23240_001	Banana	plastid	77.07	19.77
GSMUA_Achr3P27620_001	Banana	plastid	77.07	19.77
CDX82537	Canola	plastid	73.89	19.76
TraesCS7D01G032800.1	Wheat	cytosol	78.98	19.71
CDX75713	Canola	plastid	73.25	19.39
KRH43861	Soybean	plastid	72.61	19.26
VIT_06s0004g00240.t01	Wine grape	plastid	74.52	19.24
CDY08245	Canola	plastid	73.25	19.17
AT3G13470.1	Thale cress	plastid	72.61	19.13
KRH13605	Soybean	nucleus	71.97	19.12
Bra011919.1-P	Field mustard	plastid	73.89	19.08
AT1G55490.3	Thale cress	plastid	72.61	19.0
Solyc01g028810.2.1	Tomato	plastid	71.97	18.86
PGSC0003DMT400061700	Potato	extracellular	71.97	18.86
VIT_09s0002g03930.t01	Wine grape	plastid	71.97	18.55
CDY32855	Canola	plastid	70.06	18.52
Zm00001d054089_P002	Maize	plastid	72.61	18.48
Bra028922.1-P	Field mustard	plastid	69.43	18.44
CDY11918	Canola	plastid	69.43	18.32
CDY26100	Canola	plastid	73.25	18.31
AT5G56500.2	Thale cress	plastid	69.43	18.26
PGSC0003DMT400006501	Potato	plastid	70.06	18.18
Solyc03g120850.2.1	Tomato	plastid	70.06	18.18
CDY36809	Canola	plastid	69.43	17.96
CDY43988	Canola	cytosol	56.69	17.32
Bra027431.1-P	Field mustard	cytosol	56.69	17.15
Bra030858.1-P	Field mustard	cytosol	73.89	16.84
CDY02438	Canola	cytosol	73.89	16.64
CDX86994	Canola	mitochondrion, plastid	73.89	16.52
CDY10557	Canola	endoplasmic reticulum, plastid	74.52	14.11
Zm00001d028409_P001	Maize	plastid	49.04	13.1
Zm00001d000399_P001	Maize	plastid	44.59	11.99
Zm00001d034919_P001	Maize	plastid	42.68	11.47
Zm00001d013912_P001	Maize	mitochondrion	8.92	10.94
Zm00001d014090_P002	Maize	mitochondrion	36.94	10.05
Zm00001d032789_P001	Maize	plastid	36.31	9.9
Zm00001d038857_P001	Maize	mitochondrion	35.67	9.66
CDY56074	Canola	plastid	22.93	7.58
CDX85007	Canola	cytosol, plastid	46.5	7.27
Zm00001d031503_P001	Maize	endoplasmic reticulum	4.46	5.65
Zm00001d005373_P001	Maize	plastid	34.39	4.5
CDY40825	Canola	endoplasmic reticulum, vacuole	5.73	4.23
CDY10302	Canola	extracellular	0.64	1.54
CDY32775	Canola	cytosol	0.0	0.0

Protein Annotations

Gene3D:3.30.260.10	Gene3D:3.50.7.10	MapMan:35.1	UniProt:A0A1D6QNK1	ProteinID:AQK59156.1	InterPro:Chaprnin_Cpn60
ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0009987	GO:GO:0042026
InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409	InterPro:IPR027410	PRINTS:PR00298	PANTHER:PTHR11353	PANTHER:PTHR11353:SF8
SUPFAM:SSF52029	InterPro:TCP-1-like_intermed_sf	UniParc:UPI00084352B1	EnsemblPlantsGene:Zm00001d053279	EnsemblPlants:Zm00001d053279_P001	EnsemblPlants:Zm00001d053279_T001
SEG:seg	:	:	:	:	:

Description

Chaperonin 60 subunit beta 2 chloroplastic

Coordinates

chr4:+:223888322..223889201

Molecular Weight (calculated)

16532.9 Da

IEP (calculated)

5.836

GRAVY (calculated)

-0.150

Length

157 amino acids

Sequence
(BLAST)

001: MGGGQASVEQ CSGLRRPVGG SSALSARGSL KIAAIKAPGF GERKTQYLDD IAILTGATVI RDEVGLSLDK ADKSVLGTAA KVVLMKESTT IVGDGSTQEE
101: VTKRVAQIKN LIEAAEQECE KEKLNERIAK LAGGVAVIQV GAQTETELKE ITHHLFE

Best Arabidopsis Sequence Match ( AT1G55490.1 )
(BLAST)

001: MASTFTATSS IGSMVAPNGH KSDKKLISKL SSSSFGRRQS VCPRPRRSSS AIVCAAKELH FNKDGTTIRR LQAGVNKLAD LVGVTLGPKG RNVVLESKYG
101: SPRIVNDGVT VAREVELEDP VENIGAKLVR QAAAKTNDLA GDGTTTSVVL AQGFIAEGVK VVAAGANPVL ITRGIEKTAK ALVTELKKMS KEVEDSELAD
201: VAAVSAGNND EIGNMIAEAM SKVGRKGVVT LEEGKSAENN LYVVEGMQFD RGYISPYFVT DSEKMSVEFD NCKLLLVDKK ITNARDLVGV LEDAIRGGYP
301: ILIIAEDIEQ EALATLVVNK LRGTLKIAAL RAPGFGERKS QYLDDIAILT GATVIREEVG LSLDKAGKEV LGNASKVVLT KETSTIVGDG STQDAVKKRV
401: TQIKNLIEQA EQDYEKEKLN ERIAKLSGGV AVIQVGAQTE TELKEKKLRV EDALNATKAA VEEGIVVGGG CTLLRLASKV DAIKATLDND EEKVGADIVK
501: RALSYPLKLI AKNAGVNGSV VSEKVLSNDN VKFGYNAATG KYEDLMAAGI IDPTKVVRCC LEHAASVAKT FLMSDCVVVE IKEPEPVPVG NPMDNSGYGY

Arabidopsis Description

CPN60B1LEN1 [Source:UniProtKB/TrEMBL;Acc:A0A178W724]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.