Factsheet for Zm00001d038857_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 7

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	mitochondrion

extracellular: 20408568
plastid: 23198870
plasma membrane: 23508561
nucleus: 24677780
mitochondrion: 27297264
plasma membrane: 27341663
mitochondrion: 29575040

msms PMID: 24677780 doi

B Guo, Y Chen, C Li, T Wang, R Wang, B Wang, S Hu, X Du, H Xing, X Song, Y Yao, Q Sun, Z Ni

State Key Laboratory for Agrobiotechnology, Key Laboratory of Crop Heterosis and Utilization (MOE), Beijing Key Laboratory of Crop Genetic Improvement, China Agricultural University, Beijing, China; National Plant Gene Research Centre (Beijing), Beijing, China.

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 29575040 doi

WQ Wang, Y Wang, Q Zhang, IM Møller, SQ Song

Department of Molecular Biology and Genetics, Aarhus University, DK-4200 Slagelse, Denmark., Key Laboratory of Plant Molecular Physiology, Institute of Botany, the Chinese Academy of Sciences, Beijing 100093, China., Key Laboratory of Plant Resources and Beijing Botanical Garden, Institute of Botany, the Chinese Academy of Sciences, Beijing 100093, China.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

msms PMID: 23508561 doi

Z Zhang, P Voothuluru, M Yamaguchi, RE Sharp, SC Peck

Division of Biochemistry, University of Missouri Columbia, MO, USA ; Christopher S. Bond Life Sciences Center, University of Missouri Columbia, MO, USA ; Interdisciplinary Plant Group, University of Missouri Columbia, MO, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d008236_P004
Zm00001d040449_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G13860.1	Zm00001d008236_P004	AT5G56360.1	21798944
AT3G13860.1	Zm00001d040449_P001	AT5G56360.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES19881	Sorghum	mitochondrion	97.41	97.25
Os05t0540300-01	Rice	mitochondrion	89.48	89.33
TraesCS1D01G365800.1	Wheat	mitochondrion	87.41	87.72
TraesCS1A01G361400.1	Wheat	mitochondrion	87.41	87.56
HORVU1Hr1G079910.1	Barley	mitochondrion, plasma membrane	87.59	87.44
TraesCS1B01G378000.1	Wheat	mitochondrion	87.59	87.14
GSMUA_Achr7P24090_001	Banana	cytosol	69.66	76.23
PGSC0003DMT400006642	Potato	cytosol	67.07	76.13
VIT_09s0002g02240.t01	Wine grape	mitochondrion	68.97	72.6
Solyc03g121640.2.1	Tomato	plastid	71.38	72.25
KRH44140	Soybean	mitochondrion	69.66	70.38
KRH47114	Soybean	mitochondrion	69.48	70.21
CDX75733	Canola	mitochondrion	69.14	70.1
CDX82514	Canola	mitochondrion	69.14	70.1
Bra001524.1-P	Field mustard	mitochondrion	68.97	69.93
AT3G13860.1	Thale cress	mitochondrion	68.79	69.76
Zm00001d014090_P002	Maize	mitochondrion	67.76	68.11
Zm00001d032789_P001	Maize	plastid	67.24	67.71
Zm00001d013912_P001	Maize	mitochondrion	9.66	43.75
Zm00001d035937_P001	Maize	plastid	42.76	42.83
Zm00001d017567_P001	Maize	cytosol	12.07	42.42
Zm00001d054089_P002	Maize	plastid	44.83	42.14
Zm00001d045544_P002	Maize	plastid	42.93	41.5
Zm00001d034919_P001	Maize	plastid	40.17	39.9
Zm00001d000399_P001	Maize	plastid	39.48	39.21
Zm00001d031503_P001	Maize	endoplasmic reticulum	7.93	37.1
Zm00001d053279_P001	Maize	mitochondrion	9.66	35.67
Zm00001d028409_P001	Maize	plastid	35.34	34.86
Zm00001d016540_P001	Maize	cytosol	6.21	34.62
Zm00001d051252_P001	Maize	cytosol	11.72	33.17
Zm00001d046709_P001	Maize	mitochondrion	8.97	33.12
Zm00001d037526_P001	Maize	plastid	9.66	31.64
Zm00001d005373_P001	Maize	plastid	37.76	18.23

Protein Annotations

Gene3D:1.10.560.10	EntrezGene:100272259	MapMan:19.1.7.1	Gene3D:3.30.260.10	Gene3D:3.50.7.10	ProteinID:AQK88072.1
EMBL:BT061132	UniProt:C0HFM6	InterPro:Chaperonin_Cpn60_CS	InterPro:Chaprnin_Cpn60	InterPro:Cpn60/TCP-1	GO:GO:0000166
GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0005773	GO:GO:0005774	GO:GO:0006457	GO:GO:0008150
GO:GO:0009987	GO:GO:0016020	GO:GO:0042026	GO:GO:0046686	InterPro:GROEL-like_equatorial_sf	InterPro:GroEL-like_apical_dom_sf
InterPro:IPR027409	InterPro:IPR027410	InterPro:IPR027413	HAMAP:MF_00600	PFAM:PF00118	PRINTS:PR00298
ScanProsite:PS00296	PANTHER:PTHR11353	PANTHER:PTHR11353:SF85	SUPFAM:SSF48592	SUPFAM:SSF52029	SUPFAM:SSF54849
InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02348	UniParc:UPI00018C6848	EnsemblPlantsGene:Zm00001d038857	EnsemblPlants:Zm00001d038857_P001	EnsemblPlants:Zm00001d038857_T001
SEG:seg	:	:	:	:	:

Description

Chaperonin CPN60-like 2 mitochondrial

Coordinates

chr6:-:165907842..165913299

Molecular Weight (calculated)

61268.2 Da

IEP (calculated)

6.698

GRAVY (calculated)

-0.078

Length

580 amino acids

Sequence
(BLAST)

001: MYRAAAVISR SSSALRRQLA RGVAGELPRL LARGYAATAK EVSFGVGARA AMLQGVNDLA DAVKVTMGPK GRTVIIEGSH KGPKVTKDGV TVAKSVEFED
101: SAKNVGANLV KQVADATNKA AGDGTTCATV LTQAILTEGC KAVAAGVNVM DLRNGINKAI NAITAHLKSK AWKINSPEEI NQVATISANG EKEIGDLISK
201: AMEKVGKDGV ITIVDGKTLD NELEAVQGMK LSRGYISPYF VTDQKTQKCE MENPLILIHD KKISNMDSLL PALEISIKNR KPLLIVAEDV EGDALSMLVL
301: NKHRAGLKVC AVKAPGFGEN RRHNLDDMAV MTGGEVISEE RGLDLGKVQL QMLGTAKKVT VSLDDTIILD GGGDKQQIDE RCQQLRESID TSTAVFDKEK
401: AQERLSKLSG GVAVLKIGGA SEAEVGEKKD RVTDALNAAR AAVEEGIVPG GGVALLYATK ELDKISTANE DEKIGVQIIK NSLKAPLMTI AANAGIDGAI
501: VIGKLIEQED LSLGYDAAKG EYVDMIKAGI IDPVKVIRTA LQDAASVSLL MATTEAAVSE LPATKSRIAS RMPQMSGMDF

Best Arabidopsis Sequence Match ( AT3G13860.1 )
(BLAST)

001: MYRVLSKLSS SIGSSTSRKL VSGRIISSRN YAAKDISFGI GARAAMLQGV SEVAEAVKVT MGPKGRNVII ESSYGGPKIT KDGVTVAKSI SFQAKAKNIG
101: AELVKQVASA TNKVAGDGTT CATVLTQAIL IEGCKSVAAG VNVMDLRVGI NMAIAAVVSD LKSRAVMIST PEEITQVATI SANGEREIGE LIARAMEKVG
201: KEGVITVADG NTLDNELEVV EGMKLARGYI SPYFITDEKT QKCELENPII LIHEKKISDI NSLLKVLEAA VKSSRPLLIV AEDVESDALA MLILNKHHGG
301: LKVCAIKAPG FGDNRKASLD DLAVLTGAEV ISEERGLSLE KIRPELLGTA KKVTVTRDDT IILHGGGDKK LIEERCEELR SANEKSTSTF DQEKTQERLS
401: KLSGGVAVFK VGGASESEVG ERKDRVTDAL NATRAAVEEG IIPGGGVALL YATKALDNLQ TENEDQRRGV QIVQNALKAP AFTIAANAGY DGSLVVGKLL
501: EQDDCNFGFD AAKGKYVDMV KAGIIDPVKV IRTALTDAAS VSLLLTTTEA SVLVKADENT PNHVPDMASM GM

Arabidopsis Description

HSP60-3AChaperonin CPN60-like 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q93ZM7]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.