Factsheet for Zm00001d005373_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

mitochondrion 2
endoplasmic reticulum 2
extracellular 1
vacuole 1
plasma membrane 3
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, secretory
iPSORT:	mitochondrion
MultiLoc:	endoplasmic reticulum
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

plastid: 22065420
plastid: 23198870

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER96340	Sorghum	plastid	47.04	96.58
Os09t0563300-02	Rice	plastid	43.3	89.04
HORVU0Hr1G038830.17	Barley	plastid	43.55	88.64
TraesCS5B01G368900.1	Wheat	plastid	43.55	88.64
TraesCS5A01G366800.1	Wheat	plastid	43.55	88.49
TraesCS5D01G376000.1	Wheat	plastid	43.05	87.63
VIT_01s0011g01680.t01	Wine grape	plastid	29.98	61.75
PGSC0003DMT400027020	Potato	cytosol	27.23	61.01
KRH50415	Soybean	plastid	29.31	59.97
CDY47184	Canola	plastid	28.64	59.52
Bra023694.1-P	Field mustard	plastid	28.48	59.17
AT5G18820.1	Thale cress	plastid	28.31	59.13
KRG89369	Soybean	plastid	28.89	58.91
Solyc02g068730.2.1	Tomato	plastid	28.56	58.83
CDY02601	Canola	plastid	28.31	58.82
Zm00001d000399_P001	Maize	plastid	27.56	56.68
Zm00001d034919_P001	Maize	plastid	26.98	55.48
Zm00001d051252_P001	Maize	cytosol	8.49	49.76
Zm00001d031503_P001	Maize	endoplasmic reticulum	4.66	45.16
Zm00001d035937_P001	Maize	plastid	19.32	40.07
Zm00001d032789_P001	Maize	plastid	19.15	39.93
Zm00001d014090_P002	Maize	mitochondrion	18.98	39.51
Zm00001d017567_P001	Maize	cytosol	5.41	39.39
Zm00001d045544_P002	Maize	plastid	19.57	39.17
Zm00001d054089_P002	Maize	plastid	19.4	37.76
Zm00001d038857_P001	Maize	mitochondrion	18.23	37.76
GSMUA_Achr10P...	Banana	cytosol	37.64	36.87
Zm00001d028409_P001	Maize	plastid	17.9	36.56
Zm00001d016540_P001	Maize	cytosol	3.16	36.54
Zm00001d053279_P001	Maize	mitochondrion	4.5	34.39
Zm00001d046709_P001	Maize	mitochondrion	4.41	33.76
Zm00001d013912_P001	Maize	mitochondrion	3.41	32.03
Zm00001d037526_P001	Maize	plastid	4.66	31.64

Protein Annotations

MapMan:1.1.8.1.6.2.1	Gene3D:1.10.560.10	MapMan:1.2.1.2.1.1	EntrezGene:103647276	EntrezGene:103647277	MapMan:19.1.7.1
Gene3D:3.30.260.10	Gene3D:3.50.7.10	UniProt:A0A1D6EM49	InterPro:Chaprnin_Cpn60	InterPro:Cpn60/TCP-1	GO:GO:0000166
GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0042026
InterPro:GROEL-like_equatorial_sf	InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409	InterPro:IPR027410	InterPro:IPR027413	ProteinID:ONM20959.1
PFAM:PF00118	PRINTS:PR00298	PANTHER:PTHR11353	PANTHER:PTHR11353:SF121	SUPFAM:SSF48592	SUPFAM:SSF52029
SUPFAM:SSF54849	SignalP:SignalP-noTM	InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02348	TMHMM:TMhelix	UniParc:UPI000844347B
EnsemblPlantsGene:Zm00001d005373	EnsemblPlants:Zm00001d005373_P001	EnsemblPlants:Zm00001d005373_T001	SEG:seg	:	:

Description

Chaperonin 60 subunit alpha 2 chloroplastic

Coordinates

chr2:-:171265620..171276393

Molecular Weight (calculated)

128263.0 Da

IEP (calculated)

7.823

GRAVY (calculated)

-0.155

Length

1201 amino acids

Sequence
(BLAST)

0001: MARKHGWQLP AHTLQALAVF ILYIRCTSIN PADPGIMSKF EDGLINIPTN GSGIEGMNLP QKVNNATGTN SPMSTCRSSL DGHSNQRGSS IGEANMNLGS
0101: QLPKKRSSCW LLGGLLCATF VKEDCRKTDD SEQQANGEEA LFCTLCNAEW LNNCVGRKNY FTFLALMAIS LIWLAIEFGV GIAVIVLCFV DKNASRNIQD
0201: KLGNGLTRAP FAVIVGITTY DYVVAMRAMS EAAPEDEEGE NIIYSPSNSA TTGFSDEVIP HLEPGMVPST VDPDGAGYPE RANRAKKAVK ISARSLAKLD
0301: KNEVMKAAAK ARASSSVLRP IDARHGHEAD VISSGSASVR SSMSVDYSGT KESNSEMKLS PLHNSYPQSL ASQDEYDTGT PTASSLSSLV NIHKLASHSQ
0401: FSAAPRPAPP ERPVPAMVRP PVPTTQITNP GIPRPAVPTT QTTNPMFQSA TSYVRENRRA SVVWDQEAGR YVSVPAQTRT GTGADLPARN PRFLANPSGE
0501: PSSHVRGVAP GNTSSSAMPS GQPSERLTYS GQSIFFGGPM LNTPSLGAQR NEAGARARPE GSRDPNAQQR DIRGEKARTG SLPVFAPGTI LQRQKGQADK
0601: TSRALLVCFT PSLLPTAPVP VPHHWHSAAF SSSSQKLLPR SAGVGRRLVV RADVKVISTG EACRRGLAAG IDKLADAVSV TLGPKGRNVV IDQDDVPKVI
0701: NDGVTIAKAI ELPNALEHAG ATLLQEIASK TNSAVGDGTT TAIVLAREII NLGLLAVATG ANPVALRRGI DKAVHELIKI LKSKCIPVST KEDIKAVASI
0801: SSGNDEYVGN LIADALEKIG PDGIIKIESS SSIYTTVEVQ EGMKIDKGYI SPYFITNQDK SIVEFENTRV LLTDQRVNDV QEILPLLEKT TQLSVPLLII
0901: AEDVSHEVYS TLVLNKLNGL LNVAVVKCPG LGDEKKAILQ DIAIMTGADF FASDLGWGLH GITSDQLGMA QKITITSEST TIIAHPSMRP EIEARIMQLK
1001: KDLEETTSSY LKERFSARIA KLSRGVGVIK VGAATEAELE DRKLRVEDAK NATFAAISEG ITPGGGVTYV HLSKHIPSIM DLVDDTEEKM GVNIVGKALL
1101: VPAMTIARNA GADGPAVVEK LLASEWRVGY NAMTDEFEDL VAAGVVDPCR VARCVLQNSA SIAGLILMTQ AMMFDKIKKK KSPIPEIPGI PPLQISQKAK
1201: A

Best Arabidopsis Sequence Match ( AT5G18820.1 )
(BLAST)

001: MFAVSPSSFS PTTISPRRSG QRNEPRKFSV VRAGAKRILY GKDSREKLQA GIDKLADAVS ITLGPRGRNV VLAEKDTIKV INDGVTIAKS IELPDTIENA
101: GATLIQEVAI KMNESAGDGT TTAIILAREM IKAGSLAIAF GANAVSVKNG MNKTVKELVR VLQMKSIPVQ GKNDIKAVAS ISAGNDEFVG NLIAETVEKI
201: GPDGVISIES SSTSETSVIV EEGMKFDKGY MSPHFITNQE KSTVEFDKAK ILVTDQKITS AKELVPLLEK TSQLSVPLLI IAEDISAEVL EILVVNKKQG
301: LINVAVVKCP GMLDGKKALL QDIALMTGAD YLSGDLGMSL MGATSDQLGV SRRVVITANS TTIVADASTK PEIQARIAQM KKDLAETDNS YLSKKIAERI
401: AKLTGGVAVI KVGGHTETEL EDRKLRIEDA KNATFAAMRE GIVPGGGATY IHLLDEIPRI KKNLMEDSYE QIGADIVAMA LTAPAMAIAT NAGVDGSVVV
501: QKTRELEWRS GYNAMSGKYE DLLNAGIADP CRVSRFALQN AVSVAGIILT TQAVLVEKIK QPKPAVPQVP GIPTS

Arabidopsis Description

CPN60A2Chaperonin 60 subunit alpha 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q56XV8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.