Factsheet for VIT_01s0011g01680.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400027020	Potato	cytosol	70.67	76.87
KRH50415	Soybean	plastid	77.02	76.49
KRG89369	Soybean	plastid	76.84	76.06
Solyc02g068730.2.1	Tomato	plastid	75.99	75.99
CDY47184	Canola	plastid	73.07	73.7
AT5G18820.1	Thale cress	plastid	72.38	73.39
Bra023694.1-P	Field mustard	plastid	72.04	72.66
CDY02601	Canola	plastid	71.87	72.49
VIT_06s0061g00270.t01	Wine grape	plastid	63.81	63.48
Os09t0563300-02	Rice	plastid	61.75	61.64
HORVU0Hr1G038830.17	Barley	plastid	62.26	61.53
TraesCS5A01G366800.1	Wheat	plastid	62.26	61.42
EER96340	Sorghum	plastid	61.58	61.37
TraesCS5B01G368900.1	Wheat	plastid	62.09	61.36
TraesCS5D01G376000.1	Wheat	plastid	61.75	61.02
VIT_06s0004g00240.t01	Wine grape	plastid	44.77	42.93
VIT_09s0002g03930.t01	Wine grape	plastid	44.43	42.53
VIT_05s0051g00340.t01	Wine grape	mitochondrion	40.99	41.57
VIT_01s0010g00920.t01	Wine grape	mitochondrion	41.85	40.0
VIT_09s0002g02240.t01	Wine grape	mitochondrion	35.68	37.75
GSMUA_Achr10P...	Banana	cytosol	70.5	33.52
Zm00001d005373_P001	Maize	plastid	61.75	29.98

Protein Annotations

MapMan:1.1.8.1.6.2.1	Gene3D:1.10.560.10	MapMan:1.2.1.2.1.1	EntrezGene:100257653	wikigene:100257653	MapMan:19.1.7.1
Gene3D:3.30.260.10	Gene3D:3.50.7.10	ProteinID:CBI27180	ProteinID:CBI27180.3	InterPro:Chaperonin_Cpn60_CS	InterPro:Chaprnin_Cpn60
InterPro:Cpn60/TCP-1	UniProt:D7T9K9	EMBL:FN595752	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	GO:GO:0005829	GO:GO:0006457	GO:GO:0006458	GO:GO:0007005	GO:GO:0008150
GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0016043	GO:GO:0042026	GO:GO:0044183
GO:GO:0051082	GO:GO:0061077	InterPro:GROEL-like_equatorial_sf	InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409	InterPro:IPR027410
InterPro:IPR027413	EntrezGene:LOC100257653	wikigene:LOC100257653	PFAM:PF00118	PRINTS:PR00298	ScanProsite:PS00296
PANTHER:PTHR11353	PANTHER:PTHR11353:SF172	SUPFAM:SSF48592	SUPFAM:SSF52029	SUPFAM:SSF54849	InterPro:TCP-1-like_intermed_sf
TIGRFAMs:TIGR02348	UniParc:UPI0001BE2C3D	ArrayExpress:VIT_01s0011g01680	EnsemblPlantsGene:VIT_01s0011g01680	EnsemblPlants:VIT_01s0011g01680.t01	RefSeq:XP_002276547
RefSeq:XP_002276547.1	RefSeq:XP_010648810.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr1:+:1508271..1513658

Molecular Weight (calculated)

62066.2 Da

IEP (calculated)

6.550

GRAVY (calculated)

0.028

Length

583 amino acids

Sequence
(BLAST)

001: MSLCFSSSLS LPQPSFFSNL NGEQRVCGLW RNPRIFRSLR VRAGPKRISF DRECREGLQA GIDKLADAVS LTLGPKGRNV ILSEAGTLKV INDGVTIARA
101: IELSDAIENA GATLMQEVAS KTNDVAGDGT TTAIILAREM IKSGLLVVAF GANPIGLKKG MDKTVRELVK VLKKKSFPVK GRDDIRAVAS ISAGNDDFVG
201: NLIAEAIDKI GPDGVISIES SSSSETSVII EEGMKIDKGY MSPHFITNQD KSIVEFENAK VLVTDQKIST IKGIVPLLEK TTQLSVPLLI IAEDISSQVL
301: ETLVVNKMQG IINVAVVKCP GFGEGKKALL QDIALLTGAD FLSGDLGLTL DSATSDQLGI ARKVTITSNS TTFVADPSTK PEIQARILQI KKDLAETDSS
401: YLSRKLSERI AKLSGGVAII KVGAHTETEL EDRKLRIEDA KNATFAAMDE GIVPGGGATY IHLEEQIPII KHSMEDPDEQ IGADIVAKAL AAPAKAIATN
501: AGVDGAVVIE KIRTCDWRTG YDAMTGRYQD LLNAGVVDPC RVSRCALQNA VSVAGIVLTT QAVLVEKTKP PKSAVPRLPG ITP

Best Arabidopsis Sequence Match ( AT5G18820.1 )
(BLAST)

001: MFAVSPSSFS PTTISPRRSG QRNEPRKFSV VRAGAKRILY GKDSREKLQA GIDKLADAVS ITLGPRGRNV VLAEKDTIKV INDGVTIAKS IELPDTIENA
101: GATLIQEVAI KMNESAGDGT TTAIILAREM IKAGSLAIAF GANAVSVKNG MNKTVKELVR VLQMKSIPVQ GKNDIKAVAS ISAGNDEFVG NLIAETVEKI
201: GPDGVISIES SSTSETSVIV EEGMKFDKGY MSPHFITNQE KSTVEFDKAK ILVTDQKITS AKELVPLLEK TSQLSVPLLI IAEDISAEVL EILVVNKKQG
301: LINVAVVKCP GMLDGKKALL QDIALMTGAD YLSGDLGMSL MGATSDQLGV SRRVVITANS TTIVADASTK PEIQARIAQM KKDLAETDNS YLSKKIAERI
401: AKLTGGVAVI KVGGHTETEL EDRKLRIEDA KNATFAAMRE GIVPGGGATY IHLLDEIPRI KKNLMEDSYE QIGADIVAMA LTAPAMAIAT NAGVDGSVVV
501: QKTRELEWRS GYNAMSGKYE DLLNAGIADP CRVSRFALQN AVSVAGIILT TQAVLVEKIK QPKPAVPQVP GIPTS

Arabidopsis Description

CPN60A2Chaperonin 60 subunit alpha 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q56XV8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.