Factsheet for VIT_09s0002g02240.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 10

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_06s0004g00140.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G13860.1	VIT_06s0004g00140.t01	AT5G56360.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400006642	Potato	cytosol	76.59	82.58
GSMUA_Achr7P24090_001	Banana	cytosol	76.95	80.0
KRH44140	Soybean	mitochondrion	81.31	78.05
KRH47114	Soybean	mitochondrion	81.13	77.87
Solyc03g121640.2.1	Tomato	plastid	80.94	77.84
AT3G13860.1	Thale cress	mitochondrion	78.4	75.52
CDX75733	Canola	mitochondrion	77.5	74.65
CDX82514	Canola	mitochondrion	77.5	74.65
Bra001524.1-P	Field mustard	mitochondrion	77.31	74.48
VIT_05s0051g00340.t01	Wine grape	mitochondrion	72.23	69.22
TraesCS1D01G365800.1	Wheat	mitochondrion	72.6	69.2
TraesCS1A01G361400.1	Wheat	mitochondrion	72.6	69.08
EES19881	Sorghum	mitochondrion	72.78	69.02
Zm00001d038857_P001	Maize	mitochondrion	72.6	68.97
HORVU1Hr1G079910.1	Barley	mitochondrion, plasma membrane	72.6	68.85
Os05t0540300-01	Rice	mitochondrion	72.23	68.5
TraesCS1B01G378000.1	Wheat	mitochondrion	72.23	68.27
VIT_09s0002g03930.t01	Wine grape	plastid	44.46	40.23
VIT_06s0004g00240.t01	Wine grape	plastid	43.38	39.31
VIT_06s0061g00270.t01	Wine grape	plastid	41.38	38.91
VIT_01s0010g00920.t01	Wine grape	mitochondrion	40.65	36.72
VIT_01s0011g01680.t01	Wine grape	plastid	37.75	35.68

Protein Annotations

Gene3D:1.10.560.10	MapMan:19.1.7.1	Gene3D:3.30.260.10	Gene3D:3.50.7.10	ProteinID:CCB59344	ProteinID:CCB59344.1
InterPro:Chaperonin_Cpn60_CS	InterPro:Chaprnin_Cpn60	InterPro:Cpn60/TCP-1	UniProt:F6HY21	EMBL:FN596494	GO:GO:0000166
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005773	GO:GO:0005774	GO:GO:0005829
GO:GO:0006457	GO:GO:0006458	GO:GO:0006810	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020
GO:GO:0016043	GO:GO:0042026	GO:GO:0044183	GO:GO:0045041	GO:GO:0046686	GO:GO:0051082
GO:GO:0061077	InterPro:GROEL-like_equatorial_sf	InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409	InterPro:IPR027410	InterPro:IPR027413
PFAM:PF00118	PRINTS:PR00298	ScanProsite:PS00296	PANTHER:PTHR11353	PANTHER:PTHR11353:SF85	SUPFAM:SSF48592
SUPFAM:SSF52029	SUPFAM:SSF54849	TIGR:TC56792	InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02348	UniParc:UPI000210A210
ArrayExpress:VIT_09s0002g02240	EnsemblPlantsGene:VIT_09s0002g02240	EnsemblPlants:VIT_09s0002g02240.t01	SEG:seg	:	:

Description

No Description!

Coordinates

chr9:+:2055028..2062378

Molecular Weight (calculated)

58494.9 Da

IEP (calculated)

6.877

GRAVY (calculated)

-0.057

Length

551 amino acids

Sequence
(BLAST)

001: MYRVAAKLAS TIRVLSSRSY GAKDIHFGIG ARAAMLQGVT ELAEAVKVTM GPKGRNVIIE KNRGDPKVTK DGVTVAKSIK FKEKAKNVGA DLVKQVASAT
101: NTAAGDGTTC ATVLTQAIFT EGCKSVAAGV NAMDLRSGIN MAVNAVISDL KCRVATISAN GDREIGELLA KAMEKVGKQG VITVADGNTL DSELEVVEGM
201: KLARGYISPY FVTDHKTQKC ELEHPLILIH DKKISDMNSL VRILELAVKK NRALLIVAED VESDVLAMLV LNKHQAGVKG CAIKAPGFGE NRRANLEDLA
301: ILTGGEVITE DRGLNLNKVK VEMLGTAKKV TVSLDDTIIL HGGGDKRLIE ERCEELRTAM ENSSAMFDKE KAQERLSKLS GGVAVFKVGG ASEAEVGERK
401: DRVTDALNAT RAAIEEGIVP GGGVALLYAT KVLENIQTSN EDQKRGVQII QNGLKAPTFT IVSNAGGDGA LVLGKLLEQD DLNLGYDAAK GVYVDMVKAG
501: IIDPLKVVRT ALVDAASVSL LLTTTEATVV DHPDEKNSAP SRMPAMDDMG Y

Best Arabidopsis Sequence Match ( AT3G13860.1 )
(BLAST)

001: MYRVLSKLSS SIGSSTSRKL VSGRIISSRN YAAKDISFGI GARAAMLQGV SEVAEAVKVT MGPKGRNVII ESSYGGPKIT KDGVTVAKSI SFQAKAKNIG
101: AELVKQVASA TNKVAGDGTT CATVLTQAIL IEGCKSVAAG VNVMDLRVGI NMAIAAVVSD LKSRAVMIST PEEITQVATI SANGEREIGE LIARAMEKVG
201: KEGVITVADG NTLDNELEVV EGMKLARGYI SPYFITDEKT QKCELENPII LIHEKKISDI NSLLKVLEAA VKSSRPLLIV AEDVESDALA MLILNKHHGG
301: LKVCAIKAPG FGDNRKASLD DLAVLTGAEV ISEERGLSLE KIRPELLGTA KKVTVTRDDT IILHGGGDKK LIEERCEELR SANEKSTSTF DQEKTQERLS
401: KLSGGVAVFK VGGASESEVG ERKDRVTDAL NATRAAVEEG IIPGGGVALL YATKALDNLQ TENEDQRRGV QIVQNALKAP AFTIAANAGY DGSLVVGKLL
501: EQDDCNFGFD AAKGKYVDMV KAGIIDPVKV IRTALTDAAS VSLLLTTTEA SVLVKADENT PNHVPDMASM GM

Arabidopsis Description

HSP60-3AChaperonin CPN60-like 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q93ZM7]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.