Factsheet for VIT_06s0061g00270.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH25068	Soybean	nucleus	87.71	88.01
GSMUA_Achr11P...	Banana	plastid	87.03	87.03
Solyc11g069790.1.1	Tomato	plastid	86.86	86.56
PGSC0003DMT400002933	Potato	cytosol, extracellular, plastid	86.69	86.39
Bra000498.1-P	Field mustard	mitochondrion	78.67	86.17
CDY68896	Canola	cytosol	49.32	85.76
GSMUA_AchrUn_...	Banana	plastid	83.96	85.27
Os12t0277500-01	Rice	plastid	83.96	85.12
CDX83280	Canola	plastid	83.96	84.54
Bra034383.1-P	Field mustard	plastid	84.13	84.27
EES19317	Sorghum	plastid	82.76	84.06
CDY31190	Canola	plastid	83.96	83.96
CDY30514	Canola	plastid	83.79	83.93
Os03t0859600-01	Rice	plastid	44.54	83.65
Bra011985.1-P	Field mustard	plastid	83.45	83.59
Zm00001d000399_P001	Maize	plastid	82.94	83.22
AT2G28000.1	Thale cress	plastid	82.94	82.94
TraesCSU01G009200.1	Wheat	mitochondrion, plastid	81.74	82.87
TraesCS2D01G049500.1	Wheat	golgi, plastid	81.57	82.7
CDY04527	Canola	plastid	83.45	82.05
TraesCS5D01G550700.1	Wheat	plastid	81.4	81.12
HORVU5Hr1G125130.1	Barley	plastid	81.23	81.09
TraesCS4A01G315500.2	Wheat	plastid	81.06	81.06
TraesCS5B01G563900.2	Wheat	plastid	81.23	80.95
KRH30612	Soybean	endoplasmic reticulum	81.91	80.94
PGSC0003DMT400031301	Potato	plastid	81.06	80.65
Solyc06g075010.2.1	Tomato	plastid	81.06	80.65
EER90466	Sorghum	plastid	79.18	80.0
HORVU2Hr1G011340.1	Barley	cytosol	22.35	79.39
HORVU2Hr1G109400.1	Barley	cytosol	12.46	79.35
CDX71396	Canola	plastid	71.5	79.21
CDX77147	Canola	plastid	83.96	79.1
Zm00001d034919_P001	Maize	plastid	78.5	78.77
HORVU2Hr1G007840.7	Barley	mitochondrion, plastid	81.91	76.92
Os03t0859700-00	Rice	extracellular, plastid	23.72	75.14
Zm00001d051252_P001	Maize	cytosol	23.55	67.32
VIT_01s0011g01680.t01	Wine grape	plastid	63.48	63.81
VIT_06s0004g00240.t01	Wine grape	plastid	49.32	47.53
VIT_09s0002g03930.t01	Wine grape	plastid	49.32	47.45
VIT_05s0051g00340.t01	Wine grape	mitochondrion	43.86	44.7
VIT_01s0010g00920.t01	Wine grape	mitochondrion	43.34	41.64
VIT_09s0002g02240.t01	Wine grape	mitochondrion	38.91	41.38

Protein Annotations

MapMan:1.1.8.1.6.2.1	Gene3D:1.10.560.10	MapMan:1.2.1.2.1.1	EntrezGene:100253324	wikigene:100253324	MapMan:19.1.7.1
Gene3D:3.30.260.10	Gene3D:3.50.7.10	EMBL:AM450331	ProteinID:CAN69818	ProteinID:CAN69818.1	ProteinID:CCB44243
ProteinID:CCB44243.1	InterPro:Chaperonin_Cpn60_CS	InterPro:Chaprnin_Cpn60	ncoils:Coil	InterPro:Cpn60/TCP-1	UniProt:F6GWA8
EMBL:FN594957	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005829
GO:GO:0006457	GO:GO:0006458	GO:GO:0007005	GO:GO:0008150	GO:GO:0009507	GO:GO:0009536
GO:GO:0009658	GO:GO:0009987	GO:GO:0016043	GO:GO:0042026	GO:GO:0044183	GO:GO:0051082
GO:GO:0061077	InterPro:GROEL-like_equatorial_sf	InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409	InterPro:IPR027410	InterPro:IPR027413
EntrezGene:LOC100253324	wikigene:LOC100253324	HAMAP:MF_00600	PFAM:PF00118	PRINTS:PR00298	ScanProsite:PS00296
PANTHER:PTHR11353	PANTHER:PTHR11353:SF175	SUPFAM:SSF48592	SUPFAM:SSF52029	SUPFAM:SSF54849	TIGR:TC57513
TIGR:TC67963	InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02348	UniParc:UPI000210A8F1	ArrayExpress:VIT_06s0061g00270	EnsemblPlantsGene:VIT_06s0061g00270
EnsemblPlants:VIT_06s0061g00270.t01	unigene:Vvi.6840	RefSeq:XP_002277357	RefSeq:XP_002277357.2	SEG:seg	:

Description

No Description!

Coordinates

chr6:+:17589998..17593912

Molecular Weight (calculated)

61987.4 Da

IEP (calculated)

4.926

GRAVY (calculated)

-0.018

Length

586 amino acids

Sequence
(BLAST)

001: MASANAISTA SIIRSPKQES FRRRVNQQQG PKFNYRPSNN RFVVRASAKE IAFDQSSRAA LQAGIDKLAD AVGLTLGPRG RNVVLDEFGS PKVVNDGVTI
101: ARAIELADAM ENAGAALIRE VASKTNDSAG DGTTTASVLA REIIKLGLLS VTSGANPVSI KKGIDKTVHE LVKELEKKAR PVEGGDDIKA VASISAGNDE
201: FIGSMIADAI NKVGPDGVLS IESSSSFETT VDVEEGMEID RGYISPQFVT NPEKLIAEFE NARVLVTDQK ITTIKDIIPL LEKTTQLRSP LLIVAEDVTG
301: EALATLVVNK LRGILNVAAI KAPGFGERRK ALLQDIAIMT GAEFQANDLG LLIENTSVEQ LGLARKVTIT KDSTTIIADA ASKDEIQARI AQIKKELAET
401: DSVYDTEKLA ERIAKLSGGV AVIKVGAATE TELEDRKLRI EDAKNATFAA IEEGIVPGGG AAFVHLSTYV PAIKDKLEDA DERLGADIVQ KALVAPASLI
501: AHNAGVEGEV VVEKIKACEW AVGYNAMTDK YENLVEAGVI DPAKVARCAL QNAASVAGMV LTTQAIVVEK AKPKAPVAAP PQGLTI

Best Arabidopsis Sequence Match ( AT2G28000.1 )
(BLAST)

001: MASANALSSA SVLCSSRQSK LGGGNQQQGQ RVSYNKRTIR RFSVRANVKE IAFDQHSRAA LQAGIDKLAD CVGLTLGPRG RNVVLDEFGS PKVVNDGVTI
101: ARAIELPNAM ENAGAALIRE VASKTNDSAG DGTTTASILA REIIKHGLLS VTSGANPVSL KRGIDKTVQG LIEELQKKAR PVKGRDDIRA VASISAGNDD
201: LIGSMIADAI DKVGPDGVLS IESSSSFETT VEVEEGMEID RGYISPQFVT NPEKLLAEFE NARVLITDQK ITAIKDIIPI LEKTTQLRAP LLIIAEDVTG
301: EALATLVVNK LRGVLNVVAV KAPGFGERRK AMLQDIAILT GAEYLAMDMS LLVENATIDQ LGIARKVTIS KDSTTLIADA ASKDELQARI AQLKKELFET
401: DSVYDSEKLA ERIAKLSGGV AVIKVGAATE TELEDRKLRI EDAKNATFAA IEEGIVPGGG AALVHLSTVI PAIKETFEDA DERLGADIVQ KALLSPAALI
501: AQNAGVEGEV VVEKIMFSDW ENGYNAMTDT YENLFEAGVI DPAKVTRCAL QNAASVAGMV LTTQAIVVDK PKPKAPAAAA PEGLMV

Arabidopsis Description

CPN60A1SLP [Source:UniProtKB/TrEMBL;Acc:A0A178VZW6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.