Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU2Hr1G011340.1 | Barley | cytosol | 96.74 | 53.94 |
| CDY68896 | Canola | cytosol | 78.26 | 21.36 |
| HORVU2Hr1G107410.2 | Barley | cytosol | 44.57 | 20.5 |
| HORVU5Hr1G074160.1 | Barley | cytosol | 42.39 | 20.0 |
| HORVU4Hr1G076680.1 | Barley | cytosol | 42.39 | 19.7 |
| HORVU4Hr1G066820.2 | Barley | cytosol | 43.48 | 17.02 |
| TraesCSU01G009200.1 | Wheat | mitochondrion, plastid | 95.65 | 15.22 |
| TraesCS2D01G049500.1 | Wheat | golgi, plastid | 94.57 | 15.05 |
| HORVU2Hr1G007840.7 | Barley | mitochondrion, plastid | 97.83 | 14.42 |
| Os12t0277500-01 | Rice | plastid | 86.96 | 13.84 |
| EES19317 | Sorghum | plastid | 84.78 | 13.52 |
| Bra000498.1-P | Field mustard | mitochondrion | 78.26 | 13.46 |
| Zm00001d000399_P001 | Maize | plastid | 83.7 | 13.18 |
| GSMUA_Achr11P... | Banana | plastid | 83.7 | 13.14 |
| GSMUA_AchrUn_... | Banana | plastid | 79.35 | 12.65 |
| VIT_06s0061g00270.t01 | Wine grape | plastid | 79.35 | 12.46 |
| CDX83280 | Canola | plastid | 78.26 | 12.37 |
| KRH25068 | Soybean | nucleus | 78.26 | 12.33 |
| CDY31190 | Canola | plastid | 78.26 | 12.29 |
| Solyc11g069790.1.1 | Tomato | plastid | 78.26 | 12.24 |
| CDY30514 | Canola | plastid | 77.17 | 12.14 |
| Bra034383.1-P | Field mustard | plastid | 77.17 | 12.14 |
| AT2G28000.1 | Thale cress | plastid | 77.17 | 12.12 |
| HORVU5Hr1G125130.1 | Barley | plastid | 77.17 | 12.1 |
| Bra011985.1-P | Field mustard | plastid | 76.09 | 11.97 |
| CDY04527 | Canola | plastid | 77.17 | 11.91 |
| CDX77147 | Canola | plastid | 78.26 | 11.58 |
| PGSC0003DMT400031301 | Potato | plastid | 73.91 | 11.54 |
| Solyc06g075010.2.1 | Tomato | plastid | 73.91 | 11.54 |
| PGSC0003DMT400002933 | Potato | cytosol, extracellular, plastid | 72.83 | 11.39 |
| HORVU0Hr1G038830.17 | Barley | plastid | 48.91 | 7.63 |
| HORVU7Hr1G006490.2 | Barley | cytosol | 45.65 | 7.58 |
| HORVU6Hr1G005220.3 | Barley | plastid | 45.65 | 7.02 |
| KRH30612 | Soybean | endoplasmic reticulum | 44.57 | 6.91 |
| HORVU1Hr1G079910.1 | Barley | mitochondrion, plasma membrane | 40.22 | 6.37 |
| HORVU2Hr1G077410.18 | Barley | plastid | 39.13 | 6.06 |
| HORVU4Hr1G078820.3 | Barley | plastid | 40.22 | 5.86 |
| HORVU1Hr1G038680.8 | Barley | mitochondrion | 41.3 | 5.68 |
| HORVU6Hr1G000180.2 | Barley | plastid | 32.61 | 4.61 |
| Zm00001d051252_P001 | Maize | cytosol | 8.7 | 3.9 |
| CDX71396 | Canola | plastid | 14.13 | 2.46 |
| HORVU4Hr1G071510.2 | Barley | cytosol | 8.7 | 1.12 |
Protein Annotations
| EnsemblPlants:HORVU2Hr1G109400.1 | EnsemblPlantsGene:HORVU2Hr1G109400 | Gene3D:1.10.560.10 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005524 | InterPro:Cpn60/TCP-1 | InterPro:GROEL-like_equatorial_sf | InterPro:IPR027413 | PANTHER:PTHR11353 | PANTHER:PTHR11353:SF179 |
| PFAM:PF00118 | SEG:seg | SUPFAM:SSF48592 | UniParc:UPI000B4760D2 | UniProt:A0A287JEB7 | MapMan:35.1 |
Description
No Description!
Coordinates
chrchr2H:-:716548061..716548420
Molecular Weight (calculated)
9772.8 Da
IEP (calculated)
4.771
GRAVY (calculated)
-0.071
Length
92 amino acids
Sequence
(BLAST)
(BLAST)
1: PASLIANNAG VEGEVVIEKI KDSEWEMGYN AMTDKYENLI ESGVIDPAKV TRCALQNAAS VSGMVLTMQA IVVEKPKPKA KVAEPAKGQL SV
001: MASANALSSA SVLCSSRQSK LGGGNQQQGQ RVSYNKRTIR RFSVRANVKE IAFDQHSRAA LQAGIDKLAD CVGLTLGPRG RNVVLDEFGS PKVVNDGVTI
101: ARAIELPNAM ENAGAALIRE VASKTNDSAG DGTTTASILA REIIKHGLLS VTSGANPVSL KRGIDKTVQG LIEELQKKAR PVKGRDDIRA VASISAGNDD
201: LIGSMIADAI DKVGPDGVLS IESSSSFETT VEVEEGMEID RGYISPQFVT NPEKLLAEFE NARVLITDQK ITAIKDIIPI LEKTTQLRAP LLIIAEDVTG
301: EALATLVVNK LRGVLNVVAV KAPGFGERRK AMLQDIAILT GAEYLAMDMS LLVENATIDQ LGIARKVTIS KDSTTLIADA ASKDELQARI AQLKKELFET
401: DSVYDSEKLA ERIAKLSGGV AVIKVGAATE TELEDRKLRI EDAKNATFAA IEEGIVPGGG AALVHLSTVI PAIKETFEDA DERLGADIVQ KALLSPAALI
501: AQNAGVEGEV VVEKIMFSDW ENGYNAMTDT YENLFEAGVI DPAKVTRCAL QNAASVAGMV LTTQAIVVDK PKPKAPAAAA PEGLMV
101: ARAIELPNAM ENAGAALIRE VASKTNDSAG DGTTTASILA REIIKHGLLS VTSGANPVSL KRGIDKTVQG LIEELQKKAR PVKGRDDIRA VASISAGNDD
201: LIGSMIADAI DKVGPDGVLS IESSSSFETT VEVEEGMEID RGYISPQFVT NPEKLLAEFE NARVLITDQK ITAIKDIIPI LEKTTQLRAP LLIIAEDVTG
301: EALATLVVNK LRGVLNVVAV KAPGFGERRK AMLQDIAILT GAEYLAMDMS LLVENATIDQ LGIARKVTIS KDSTTLIADA ASKDELQARI AQLKKELFET
401: DSVYDSEKLA ERIAKLSGGV AVIKVGAATE TELEDRKLRI EDAKNATFAA IEEGIVPGGG AALVHLSTVI PAIKETFEDA DERLGADIVQ KALLSPAALI
501: AQNAGVEGEV VVEKIMFSDW ENGYNAMTDT YENLFEAGVI DPAKVTRCAL QNAASVAGMV LTTQAIVVDK PKPKAPAAAA PEGLMV
Arabidopsis Description
CPN60A1SLP [Source:UniProtKB/TrEMBL;Acc:A0A178VZW6]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.