Factsheet for Os12t0277500-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 3

Predictors

GFP

MS/MS

Papers

plastid: 17189339
plastid: 21433289
extracellular: 23159799
plasma membrane: 27800704
plastid: 27992503
extracellular: 28232208

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 23159799 doi

SG Kim, Y Wang, KH Lee, ZY Park, J Park, J Wu, SJ Kwon, YH Lee, GK Agrawal, R Rakwal, ST Kim, KY Kang

Plant Molecular Biology and Biotechnology Research Center, Gyeongsang National University, Jinju, 660-701, South Korea.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

msms PMID: 21433289 doi

S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky

Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.

msms PMID: 17189339 doi

T Kleffmann, A von Zychlinski, D Russenberger, M Hirsch-Hoffmann, P Gehrig, W Gruissem, S Baginsky

Institute of Plant Sciences, Eidgenössische Technische Hochschule Zurich, 8092 Zurich, Switzerland.

msms PMID: 28232208 doi

Y Wang, R Gupta, W Song, HH Huh, SE Lee, J Wu, GK Agrawal, R Rakwal, KY Kang, SR Park, ST Kim

Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea., Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea. Electronic address: stkim71@pusan.ac.kr., Department of Plant Microbe Interactions, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Division of Applied Life Science (BK21 Program), Gyeongsang National University, Jinju, South Korea., National Academy of Agricultural Science, Rural Development Administration, Suwon 441-707, South Korea. Electronic address: srpark@korea.kr., Plant Proteomics Group, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal; Faculty of Health and Sport Sciences, Tsukuba International Academy for Sport Studies (TIAS), University of Tsukuba, 1-1-1 Tennodai, Tsukuba, 305-8574, Ibaraki, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES19317	Sorghum	plastid	93.94	94.11
TraesCSU01G009200.1	Wheat	mitochondrion, plastid	92.91	92.91
TraesCS2D01G049500.1	Wheat	golgi, plastid	92.56	92.56
Zm00001d000399_P001	Maize	plastid	93.08	92.12
HORVU2Hr1G109400.1	Barley	cytosol	13.84	86.96
HORVU2Hr1G007840.7	Barley	mitochondrion, plastid	93.08	86.22
GSMUA_Achr11P...	Banana	plastid	87.02	85.84
HORVU2Hr1G011340.1	Barley	cytosol	24.39	85.45
Bra000498.1-P	Field mustard	mitochondrion	78.03	84.3
GSMUA_AchrUn_...	Banana	plastid	83.91	84.06
VIT_06s0061g00270.t01	Wine grape	plastid	85.12	83.96
KRH25068	Soybean	nucleus	84.6	83.73
Os03t0859600-01	Rice	plastid	44.81	83.01
CDY68896	Canola	cytosol	48.1	82.49
Solyc11g069790.1.1	Tomato	plastid	83.91	82.48
PGSC0003DMT400002933	Potato	cytosol, extracellular, plastid	83.05	81.63
CDX83280	Canola	plastid	82.18	81.62
Bra011985.1-P	Field mustard	plastid	82.35	81.37
AT2G28000.1	Thale cress	plastid	82.35	81.23
Bra034383.1-P	Field mustard	plastid	82.18	81.2
CDY31190	Canola	plastid	82.01	80.89
CDY30514	Canola	plastid	81.83	80.85
CDY04527	Canola	plastid	82.35	79.87
Os03t0859700-00	Rice	extracellular, plastid	24.74	77.3
KRH30612	Soybean	endoplasmic reticulum	78.55	76.56
CDX77147	Canola	plastid	82.35	76.53
CDX71396	Canola	plastid	69.72	76.18
Solyc06g075010.2.1	Tomato	plastid	77.16	75.72
PGSC0003DMT400031301	Potato	plastid	76.99	75.55
Zm00001d051252_P001	Maize	cytosol	26.3	74.15
Os09t0563300-02	Rice	plastid	57.44	56.85
Os06t0114000-02	Rice	plastid	49.48	47.59
Os02t0102900-01	Rice	plastid	49.13	47.49
Os10t0462900-01	Rice	mitochondrion	43.43	43.73
Os03t0143400-01	Rice	mitochondrion	42.56	42.63
Os04t0443900-01	Rice	plastid	42.21	41.5
Os05t0540300-01	Rice	mitochondrion	41.0	40.79
Os02t0103100-01	Rice	plasma membrane, vacuole	0.17	0.68

Protein Annotations

MapMan:1.1.8.1.6.2.1	Gene3D:1.10.560.10	MapMan:1.2.1.2.1.1	MapMan:19.1.7.1	Gene3D:3.30.260.10	Gene3D:3.50.7.10
EntrezGene:4351976	ProteinID:ABA97087.1	ProteinID:BAF29586.1	ProteinID:BAT16683.1	ProteinID:BAT16685.1	ProteinID:BAT16686.1
InterPro:Chaperonin_Cpn60_CS	InterPro:Chaprnin_Cpn60	ncoils:Coil	InterPro:Cpn60/TCP-1	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0005829	GO:GO:0006457	GO:GO:0006458	GO:GO:0007005
GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	GO:GO:0042026	GO:GO:0044183	GO:GO:0051082
GO:GO:0061077	InterPro:GROEL-like_equatorial_sf	EMBL:GU120334	InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409	InterPro:IPR027410
InterPro:IPR027413	HAMAP:MF_00600	EnsemblPlantsGene:Os12g0277500	EnsemblPlants:Os12t0277500-01	PFAM:PF00118	PRINTS:PR00298
ScanProsite:PS00296	PANTHER:PTHR11353	PANTHER:PTHR11353:SF175	UniProt:Q2QU06	SUPFAM:SSF48592	SUPFAM:SSF52029
SUPFAM:SSF54849	InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02348	UniParc:UPI000068154D	RefSeq:XP_015620475.1	SEG:seg

Description

chaperonin 60 alpha subunit 1Plastid chaperonin 60 alpha subunit, Folding of Rubisco large subunit (rbcL), Seedling development (Os12t0277500-01);Similar to RuBisCO large subunit-binding protein subunit alpha, chloroplastic (Fragment). (Os12t0277500-02);Similar to RuBisCO large subunit-binding protein subunit alpha, chloroplastic (Fragment). (Os12t0277500-03);Similar to RuBisCO large subunit-binding protein subunit alpha, chloroplastic (Fragment). (Os12t0277500-04)

Coordinates

chr12:+:10293602..10297901

Molecular Weight (calculated)

61133.3 Da

IEP (calculated)

4.844

GRAVY (calculated)

-0.032

Length

578 amino acids

Sequence
(BLAST)

001: MASANAISTA SLLRSFSSQG RVRRAKNGRA QRLVVRADAK DIAFDQKSRA ALQAGVEKLA NAVGVTLGPR GRNVVLDEYG SPKVVNDGVT IARAIELYDP
101: MENAGAALIR EVASKTNDSA GDGTTTASVL AREIIKLGLL SVTSGANPVS LKKGIDKTVH GLIEELEKKA RPVKGSGDIK AVASISAGND ELIGSMIADA
201: IDKVGPDGVL SIESSSSFET TVDVEEGMEI DRGYISPQFV TNLEKSIVEF ENAKVLITDQ KITSIKEILP ILEKTTQLRA PLFIIAEDIT GEALATLVVN
301: KLRGILNVAA IKAPSFGERR KAVLQDIAIV TGAEFLAKDL GLLVENATEE QLGTARKVTI HQTTTTLIAD AASKDEIQAR VAQLKKELSE TDSIYDTEKL
401: AERIAKLSGG VAVIKVGAAT ETELEDRQLR IEDAKNATFA AIEEGIVPGG GTAYVHLSTT VPAIKETIED HDERLGADII QKALVAPASL IAHNAGVEGE
501: VVVEKIKDGE WEVGYNAMND KYENLIEAGV IDPAKVTRCA LQNAASVAGM VLTTQAIVVE KPKPKAPVAE PAEGTLTV

Best Arabidopsis Sequence Match ( AT2G28000.1 )
(BLAST)

001: MASANALSSA SVLCSSRQSK LGGGNQQQGQ RVSYNKRTIR RFSVRANVKE IAFDQHSRAA LQAGIDKLAD CVGLTLGPRG RNVVLDEFGS PKVVNDGVTI
101: ARAIELPNAM ENAGAALIRE VASKTNDSAG DGTTTASILA REIIKHGLLS VTSGANPVSL KRGIDKTVQG LIEELQKKAR PVKGRDDIRA VASISAGNDD
201: LIGSMIADAI DKVGPDGVLS IESSSSFETT VEVEEGMEID RGYISPQFVT NPEKLLAEFE NARVLITDQK ITAIKDIIPI LEKTTQLRAP LLIIAEDVTG
301: EALATLVVNK LRGVLNVVAV KAPGFGERRK AMLQDIAILT GAEYLAMDMS LLVENATIDQ LGIARKVTIS KDSTTLIADA ASKDELQARI AQLKKELFET
401: DSVYDSEKLA ERIAKLSGGV AVIKVGAATE TELEDRKLRI EDAKNATFAA IEEGIVPGGG AALVHLSTVI PAIKETFEDA DERLGADIVQ KALLSPAALI
501: AQNAGVEGEV VVEKIMFSDW ENGYNAMTDT YENLFEAGVI DPAKVTRCAL QNAASVAGMV LTTQAIVVDK PKPKAPAAAA PEGLMV

Arabidopsis Description

CPN60A1SLP [Source:UniProtKB/TrEMBL;Acc:A0A178VZW6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.