CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX83280	Canola	plastid	91.12	82.82
CDY30514	Canola	plastid	91.49	82.73
CDY31190	Canola	plastid	91.3	82.42
CDY04527	Canola	plastid	92.63	82.21
AT2G28000.1	Thale cress	plastid	87.9	79.35
CDX77147	Canola	plastid	91.87	78.14
CDY31193	Canola	plastid	34.78	77.64
CDY68896	Canola	cytosol	48.02	75.37
KRH25068	Soybean	nucleus	81.1	73.46
Solyc11g069790.1.1	Tomato	plastid	80.15	72.11
PGSC0003DMT400002933	Potato	cytosol, extracellular, plastid	79.77	71.77
KRH30612	Soybean	endoplasmic reticulum	80.34	71.67
VIT_06s0061g00270.t01	Wine grape	plastid	79.21	71.5
GSMUA_AchrUn_...	Banana	plastid	76.56	70.19
GSMUA_Achr11P...	Banana	plastid	77.32	69.8
Os03t0859700-00	Rice	extracellular, plastid	24.39	69.73
Os12t0277500-01	Rice	plastid	76.18	69.72
EES19317	Sorghum	plastid	75.43	69.15
TraesCSU01G009200.1	Wheat	mitochondrion, plastid	75.43	69.03
TraesCS2D01G049500.1	Wheat	golgi, plastid	75.43	69.03
EER90466	Sorghum	plastid	75.61	68.97
Zm00001d000399_P001	Maize	plastid	75.8	68.66
Zm00001d034919_P001	Maize	plastid	74.86	67.81
TraesCS4A01G315500.2	Wheat	plastid	74.29	67.06
TraesCS5D01G550700.1	Wheat	plastid	74.48	67.01
HORVU5Hr1G125130.1	Barley	plastid	74.29	66.95
TraesCS5B01G563900.2	Wheat	plastid	74.1	66.67
Solyc06g075010.2.1	Tomato	plastid	73.72	66.21
PGSC0003DMT400031301	Potato	plastid	73.53	66.04
HORVU2Hr1G007840.7	Barley	mitochondrion, plastid	75.43	63.94
Os03t0859600-01	Rice	plastid	36.48	61.86
Zm00001d051252_P001	Maize	cytosol	23.25	60.0
CDY47184	Canola	plastid	56.33	51.56
CDY02601	Canola	plastid	55.77	51.04
CDY32855	Canola	plastid	47.64	42.42
CDY11918	Canola	plastid	47.64	42.35
CDY36809	Canola	plastid	47.45	41.35
HORVU2Hr1G011340.1	Barley	cytosol	12.85	41.21
CDX75715	Canola	cytosol	43.67	41.03
CDY08245	Canola	plastid	46.31	40.83
CDX82537	Canola	plastid	45.18	40.72
CDX75713	Canola	plastid	45.56	40.64
CDX72433	Canola	endoplasmic reticulum	23.63	39.56
CDY72107	Canola	mitochondrion	22.87	39.41
CDY26100	Canola	plastid	46.12	38.85
CDY23605	Canola	cytosol	30.43	37.1
CDX94835	Canola	mitochondrion	39.89	36.57
CDX93002	Canola	mitochondrion	37.62	36.18
CDY59049	Canola	mitochondrion	14.74	35.78
CDY20555	Canola	plastid	41.02	35.75
CDY19471	Canola	mitochondrion	39.89	35.58
CDY66193	Canola	plastid	40.64	35.42
CDX82514	Canola	mitochondrion	37.81	34.97
CDX84697	Canola	mitochondrion	37.05	34.81
CDX75733	Canola	mitochondrion	37.62	34.79
CDY02438	Canola	cytosol	45.75	34.72
CDY17152	Canola	mitochondrion	37.43	34.49
CDY59050	Canola	cytosol	20.6	32.25
CDY43988	Canola	cytosol	31.19	32.1
CDY56074	Canola	plastid	28.36	31.58
CDY40825	Canola	endoplasmic reticulum, vacuole	12.48	30.99
CDY10557	Canola	endoplasmic reticulum, plastid	45.56	29.07
CDY66712	Canola	mitochondrion	32.51	28.52
CDX79518	Canola	cytosol	10.4	27.23
CDY37741	Canola	mitochondrion	29.68	25.7
CDX86994	Canola	mitochondrion, plastid	28.73	21.65
CDY56079	Canola	plastid	3.97	15.67
HORVU2Hr1G109400.1	Barley	cytosol	2.46	14.13
CDX85007	Canola	cytosol, plastid	24.39	12.85
CDY10302	Canola	extracellular	0.95	7.69
CDY32775	Canola	cytosol	0.95	5.88

Protein Annotations

MapMan:1.1.8.1.6.2.1	Gene3D:1.10.560.10	MapMan:1.2.1.2.1.1	MapMan:19.1.7.1	Gene3D:3.30.260.10	Gene3D:3.50.7.10
GO:A0A078C2Z8	EnsemblPlants:CDX71396	ProteinID:CDX71396	ProteinID:CDX71396.1	InterPro:Chaperonin_Cpn60_CS	InterPro:Chaprnin_Cpn60
ncoils:Coil	InterPro:Cpn60/TCP-1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006457	GO:GO:0008150
GO:GO:0009987	GO:GO:0042026	InterPro:GROEL-like_equatorial_sf	EnsemblPlantsGene:GSBRNA2T00148217001	InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409
InterPro:IPR027410	InterPro:IPR027413	PFAM:PF00118	PRINTS:PR00298	ScanProsite:PS00296	PANTHER:PTHR11353
PANTHER:PTHR11353:SF175	SUPFAM:SSF48592	SUPFAM:SSF52029	SUPFAM:SSF54849	InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02348
UniParc:UPI0004EE7AE0	SEG:seg	:	:	:	:

Description

BnaC04g16310D

Coordinates

chrLK031793:-:474470..476587

Molecular Weight (calculated)

56110.6 Da

IEP (calculated)

5.348

GRAVY (calculated)

0.022

Length

529 amino acids

Sequence
(BLAST)

001: MATANTLSSA SVLCSSRQFS FLKCFIGLWG KLSGGSQQKG QRVSYRKASR RFSVRANVKE ITFDQSSRAA LQAGIDKLAD AVGLTLGPRG RDVGLDEFGS
101: PKVVNNGLTI ARAIELPDAM ENAGAALIRE VASKTNDSAG DGTTTASVLA REIIKHGLLS VTSGANPVSL KRGIDKTVQA LIEELEKRAR PVKGGSDIKA
201: VATISAGNDE LVGAMIADAI DKVGPDGVLS IESSSSFETT VKVEEGMEID RGYISPQFVT NPEKLLVEFE NARVLITDQK ITTIKDIIPI LEKTTQLRAP
301: LLIIVEDVTG EALATLVVNK LCGVLNVVAV KAPGFGERRK AMLQDIAILT GAEYQALDMG LLVENTTIDQ LGIARKVTIS KDSATLIADA ASKDELQARI
401: SQLKKELFET DSVYGSEKLA ERIAKLSGGV AVIKVGAATE LEDRKLRIED AKNATFAAIE EGIVPGGGAT LVHLSTVIPA IKETFEDADE RLGADIVQKA
501: LVASAALIAQ NAGIEEKLWW KRLCSANGS

Best Arabidopsis Sequence Match ( AT2G28000.1 )
(BLAST)

001: MASANALSSA SVLCSSRQSK LGGGNQQQGQ RVSYNKRTIR RFSVRANVKE IAFDQHSRAA LQAGIDKLAD CVGLTLGPRG RNVVLDEFGS PKVVNDGVTI
101: ARAIELPNAM ENAGAALIRE VASKTNDSAG DGTTTASILA REIIKHGLLS VTSGANPVSL KRGIDKTVQG LIEELQKKAR PVKGRDDIRA VASISAGNDD
201: LIGSMIADAI DKVGPDGVLS IESSSSFETT VEVEEGMEID RGYISPQFVT NPEKLLAEFE NARVLITDQK ITAIKDIIPI LEKTTQLRAP LLIIAEDVTG
301: EALATLVVNK LRGVLNVVAV KAPGFGERRK AMLQDIAILT GAEYLAMDMS LLVENATIDQ LGIARKVTIS KDSTTLIADA ASKDELQARI AQLKKELFET
401: DSVYDSEKLA ERIAKLSGGV AVIKVGAATE TELEDRKLRI EDAKNATFAA IEEGIVPGGG AALVHLSTVI PAIKETFEDA DERLGADIVQ KALLSPAALI
501: AQNAGVEGEV VVEKIMFSDW ENGYNAMTDT YENLFEAGVI DPAKVTRCAL QNAASVAGMV LTTQAIVVDK PKPKAPAAAA PEGLMV

Arabidopsis Description

CPN60A1SLP [Source:UniProtKB/TrEMBL;Acc:A0A178VZW6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.