CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra001934.1-P	Field mustard	mitochondrion	100.0	95.32
CDX94835	Canola	mitochondrion	99.64	94.97
CDY59050	Canola	cytosol	56.55	92.01
AT3G23990.1	Thale cress	mitochondrion	95.45	90.99
VIT_05s0051g00340.t01	Wine grape	mitochondrion	89.09	85.22
KRH33513	Soybean	mitochondrion	87.64	83.83
KRG90277	Soybean	mitochondrion	87.45	83.65
KRG92192	Soybean	mitochondrion	87.09	83.3
Os10t0462900-01	Rice	mitochondrion	86.91	83.28
KRH34594	Soybean	mitochondrion	87.27	83.19
CDX79518	Canola	cytosol	30.55	83.17
KXG40202	Sorghum	cytosol	61.45	83.05
GSMUA_Achr10P...	Banana	mitochondrion	86.55	82.78
Zm00001d014090_P002	Maize	mitochondrion	86.18	82.15
EER94121	Sorghum	mitochondrion	86.18	82.15
Zm00001d032789_P001	Maize	plastid	85.64	81.77
TraesCS1A01G145000.1	Wheat	mitochondrion	85.27	81.71
TraesCS1B01G162300.1	Wheat	mitochondrion	85.09	81.53
TraesCS1D01G144000.1	Wheat	mitochondrion	85.09	81.53
GSMUA_Achr1P11160_001	Banana	mitochondrion	85.64	81.49
Os03t0143400-01	Rice	mitochondrion	85.09	81.11
CDX84697	Canola	mitochondrion	82.55	80.64
TraesCS4A01G409100.1	Wheat	mitochondrion	84.0	80.21
TraesCS4B01G307700.1	Wheat	mitochondrion	83.82	80.03
CDY59049	Canola	mitochondrion	31.64	79.82
CDY17152	Canola	mitochondrion	82.91	79.44
CDY19471	Canola	mitochondrion	85.45	79.26
CDY72107	Canola	mitochondrion	43.45	77.85
HORVU4Hr1G078820.3	Barley	plastid	84.0	73.22
HORVU1Hr1G038680.8	Barley	mitochondrion	86.0	70.7
TraesCS4D01G305900.1	Wheat	golgi	83.82	70.06
CDX82514	Canola	mitochondrion	70.18	67.48
CDX75733	Canola	mitochondrion	70.0	67.31
GSMUA_Achr10P...	Banana	cytosol	15.45	61.59
CDY66712	Canola	mitochondrion	64.73	59.04
CDY37741	Canola	mitochondrion	64.36	57.94
TraesCS4B01G266200.1	Wheat	cytosol	42.0	55.66
CDY68896	Canola	cytosol	26.55	43.32
CDY11918	Canola	plastid	46.55	43.03
CDY32855	Canola	plastid	45.82	42.42
CDX82537	Canola	plastid	45.09	42.25
CDY36809	Canola	plastid	46.18	41.85
CDX75713	Canola	plastid	44.73	41.48
CDY08245	Canola	plastid	44.55	40.83
CDX75715	Canola	cytosol	41.45	40.5
CDY32775	Canola	cytosol	6.18	40.0
CDX83280	Canola	plastid	41.82	39.52
CDY30514	Canola	plastid	41.82	39.32
CDY26100	Canola	plastid	44.73	39.17
CDY04527	Canola	plastid	42.36	39.09
CDY31190	Canola	plastid	41.64	39.08
CDX72433	Canola	endoplasmic reticulum	21.82	37.97
CDY20555	Canola	plastid	41.82	37.89
CDY66193	Canola	plastid	41.64	37.73
CDX71396	Canola	plastid	36.18	37.62
CDX77147	Canola	plastid	42.18	37.3
CDY23605	Canola	cytosol	28.18	35.71
CDY02438	Canola	cytosol	45.09	35.58
CDY02601	Canola	plastid	36.18	34.43
CDY47184	Canola	plastid	36.0	34.26
HORVU4Hr1G071510.2	Barley	cytosol	42.73	33.01
CDY56074	Canola	plastid	27.64	32.0
CDY31193	Canola	plastid	13.09	30.38
CDY10557	Canola	endoplasmic reticulum, plastid	45.09	29.92
CDY43988	Canola	cytosol	27.27	29.18
CDY10302	Canola	extracellular	3.09	26.15
CDY56079	Canola	plastid	6.36	26.12
CDY40825	Canola	endoplasmic reticulum, vacuole	10.0	25.82
CDX86994	Canola	mitochondrion, plastid	32.36	25.36
CDX85007	Canola	cytosol, plastid	26.0	14.24

Protein Annotations

Gene3D:1.10.560.10	MapMan:19.1.7.1	Gene3D:3.30.260.10	Gene3D:3.50.7.10	GO:A0A078DVT2	EnsemblPlants:CDX93002
ProteinID:CDX93002	ProteinID:CDX93002.1	InterPro:Chaperonin_Cpn60_CS	InterPro:Chaprnin_Cpn60	InterPro:Cpn60/TCP-1	GO:GO:0000166
GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006457	GO:GO:0008150	GO:GO:0009987	GO:GO:0042026	InterPro:GROEL-like_equatorial_sf
EnsemblPlantsGene:GSBRNA2T00154888001	InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409	InterPro:IPR027410	InterPro:IPR027413	HAMAP:MF_00600
PFAM:PF00118	PRINTS:PR00298	ScanProsite:PS00296	PANTHER:PTHR11353	PANTHER:PTHR11353:SF85	SUPFAM:SSF48592
SUPFAM:SSF52029	SUPFAM:SSF54849	InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02348	UniParc:UPI0004EEF7E5	SEG:seg

Description

BnaA03g37240D

Coordinates

chrLK031874:-:613511..617032

Molecular Weight (calculated)

58476.8 Da

IEP (calculated)

5.096

GRAVY (calculated)

-0.048

Length

550 amino acids

Sequence
(BLAST)

001: MFRFVSSLAS KARIASNTRQ VSSRMSWSRN YAAKEIKFGV EARALMLRGV EELADAVRVT MGPKGRTVVI EQSWGAPKQV ANATNDVAGD GTTCATVLTR
101: AIFTEGCKSV AAGMNAMDLR RGISMAVDAV VTNLKSRARM ISTSEEIAQV GTISANGERE IGELIAKAME KVGKEGVITI QDGKTLINEL EVVEGMKLDR
201: GYTSPYFITN QKTQKCELEE PLILIHEKKI SSINSIVKVL ELAMKKQRPL LIVSEDVESE ALATLILNKL RAGIKVCAIK APGFGENRKA NLQDLAALTG
301: GEVITDELGM NLEKVDLGML GTCKRVTVSK DDTVILDGAG DKTAIEERCE QIRSAIELST SDYDKEKLQE RLAKLSGGVA VLKIGGASEA EVGEKKDRVT
401: DALNATKAAV EEGILPGGGV ALLYAARELE KLPTANFDQK IGVQIIQNAL KTPVHTIASN AGVEGAVIVG KLLEQDNTDL GYDAAKGEYV DMVKAGIIDP
501: LKVIRTALVD AASVSSLLTT TEAVVVDLPK DESESAGAGA GMGGMGGMDY

Best Arabidopsis Sequence Match ( AT3G23990.1 )
(BLAST)

001: MYRFASNLAS KARIAQNARQ VSSRMSWSRN YAAKEIKFGV EARALMLKGV EDLADAVKVT MGPKGRNVVI EQSWGAPKVT KDGVTVAKSI EFKDKIKNVG
101: ASLVKQVANA TNDVAGDGTT CATVLTRAIF AEGCKSVAAG MNAMDLRRGI SMAVDAVVTN LKSKARMIST SEEIAQVGTI SANGEREIGE LIAKAMEKVG
201: KEGVITIQDG KTLFNELEVV EGMKLDRGYT SPYFITNQKT QKCELDDPLI LIHEKKISSI NSIVKVLELA LKRQRPLLIV SEDVESDALA TLILNKLRAG
301: IKVCAIKAPG FGENRKANLQ DLAALTGGEV ITDELGMNLE KVDLSMLGTC KKVTVSKDDT VILDGAGDKK GIEERCEQIR SAIELSTSDY DKEKLQERLA
401: KLSGGVAVLK IGGASEAEVG EKKDRVTDAL NATKAAVEEG ILPGGGVALL YAARELEKLP TANFDQKIGV QIIQNALKTP VYTIASNAGV EGAVIVGKLL
501: EQDNPDLGYD AAKGEYVDMV KAGIIDPLKV IRTALVDAAS VSSLLTTTEA VVVDLPKDES ESGAAGAGMG GMGGMDY

Arabidopsis Description

CPN60Chaperonin CPN60, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:P29197]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.