CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX82537	Canola	plastid	95.11	96.08
AT3G13470.1	Thale cress	plastid	95.45	94.97
CDX75715	Canola	cytosol	87.52	92.18
CDY08245	Canola	plastid	91.23	90.17
Solyc01g028810.2.1	Tomato	plastid	88.53	87.65
PGSC0003DMT400061700	Potato	extracellular	88.53	87.65
Zm00001d035937_P001	Maize	plastid	85.16	87.22
KRH13605	Soybean	nucleus	86.85	87.14
EER89076	Sorghum	plastid	84.82	86.87
KRH43861	Soybean	plastid	86.68	86.82
CDY26100	Canola	plastid	91.57	86.47
CDY32855	Canola	plastid	85.83	85.69
HORVU7Hr1G006490.2	Barley	cytosol	79.76	85.38
TraesCS6B01G012000.1	Wheat	cytosol	59.02	85.16
Os06t0114000-02	Rice	plastid	86.0	84.86
Zm00001d045544_P002	Maize	plastid	85.33	84.33
TraesCS4A01G452700.2	Wheat	plastid	82.97	84.25
CDY11918	Canola	plastid	84.49	84.2
GSMUA_Achr9P23240_001	Banana	plastid	86.85	84.15
GSMUA_Achr3P27620_001	Banana	plastid	86.85	84.15
CDY36809	Canola	plastid	84.49	82.54
TraesCS6A01G006400.1	Wheat	golgi	82.29	81.61
Os02t0102900-01	Rice	plastid	82.12	81.44
HORVU4Hr1G076680.1	Barley	cytosol	27.15	81.31
TraesCS7A01G036200.2	Wheat	golgi	84.99	81.29
TraesCS6D01G009100.1	Wheat	golgi	81.62	80.94
TraesCS6B01G011800.1	Wheat	plastid	80.78	80.78
TraesCS6B01G012100.3	Wheat	plastid	81.62	80.67
KXG29249	Sorghum	plastid	82.12	80.63
HORVU5Hr1G074160.1	Barley	cytosol	26.48	80.51
TraesCS7D01G032800.1	Wheat	cytosol	84.99	80.13
HORVU2Hr1G107410.2	Barley	cytosol	26.81	79.5
Zm00001d054089_P002	Maize	plastid	81.11	77.96
CDY02438	Canola	cytosol	91.57	77.91
Zm00001d016540_P001	Maize	cytosol	13.66	77.88
CDX72433	Canola	endoplasmic reticulum	40.47	75.95
TraesCS6B01G039300.2	Wheat	plastid	76.22	75.59
TraesCS6A01G028100.1	Wheat	plastid	75.89	75.25
TraesCS6D01G031400.1	Wheat	plastid	75.72	75.08
HORVU6Hr1G005220.3	Barley	plastid	75.38	74.75
CDY32775	Canola	cytosol	10.62	74.12
Zm00001d053279_P001	Maize	mitochondrion	19.39	73.25
GSMUA_Achr11P...	Banana	plastid	85.83	73.13
Zm00001d046709_P001	Maize	mitochondrion	19.06	71.97
CDY23605	Canola	cytosol	51.94	70.97
HORVU6Hr1G000180.2	Barley	plastid	76.56	69.74
HORVU4Hr1G066820.2	Barley	cytosol	27.15	68.51
Zm00001d037526_P001	Maize	plastid	19.9	66.67
CDY10557	Canola	endoplasmic reticulum, plastid	91.74	65.62
CDY56074	Canola	plastid	51.77	64.63
CDY20555	Canola	plastid	63.91	62.44
CDY66193	Canola	plastid	63.41	61.94
CDY43988	Canola	cytosol	52.61	60.7
CDY10302	Canola	extracellular	6.24	56.92
CDX86994	Canola	mitochondrion, plastid	62.23	52.56
CDY68896	Canola	cytosol	27.66	48.66
CDX83280	Canola	plastid	47.39	48.28
CDY30514	Canola	plastid	47.39	48.03
CDY31190	Canola	plastid	47.22	47.78
CDY04527	Canola	plastid	47.55	47.32
CDX79518	Canola	cytosol	16.02	47.03
CDX71396	Canola	plastid	40.64	45.56
CDX94835	Canola	mitochondrion	44.01	45.23
CDX77147	Canola	plastid	47.39	45.18
CDX93002	Canola	mitochondrion	41.48	44.73
CDY47184	Canola	plastid	43.17	44.29
CDY02601	Canola	plastid	43.0	44.12
CDX82514	Canola	mitochondrion	42.33	43.88
CDX84697	Canola	mitochondrion	41.65	43.87
CDX75733	Canola	mitochondrion	42.16	43.71
CDY59050	Canola	cytosol	24.79	43.49
CDY17152	Canola	mitochondrion	41.65	43.03
CDY40825	Canola	endoplasmic reticulum, vacuole	15.35	42.72
CDY19471	Canola	mitochondrion	42.66	42.66
CDY72107	Canola	mitochondrion	21.92	42.35
CDY31193	Canola	plastid	16.19	40.51
CDY66712	Canola	mitochondrion	35.41	34.83
CDY59049	Canola	mitochondrion	12.65	34.4
CDY37741	Canola	mitochondrion	34.06	33.06
CDX85007	Canola	cytosol, plastid	46.71	27.59
CDY56079	Canola	plastid	4.89	21.64
Os02t0103100-01	Rice	plasma membrane, vacuole	0.17	0.68

Protein Annotations

MapMan:1.1.8.1.6.2.2	Gene3D:1.10.560.10	MapMan:1.2.1.2.1.2	MapMan:19.1.7.1	Gene3D:3.30.260.10	Gene3D:3.50.7.10
GO:A0A078CKW7	EnsemblPlants:CDX75713	ProteinID:CDX75713	ProteinID:CDX75713.1	InterPro:Chaprnin_Cpn60	ncoils:Coil
InterPro:Cpn60/TCP-1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0009987	GO:GO:0042026
InterPro:GROEL-like_equatorial_sf	EnsemblPlantsGene:GSBRNA2T00123626001	InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409	InterPro:IPR027410	InterPro:IPR027413
HAMAP:MF_00600	PFAM:PF00118	PRINTS:PR00298	PANTHER:PTHR11353	PANTHER:PTHR11353:SF164	SUPFAM:SSF48592
SUPFAM:SSF52029	SUPFAM:SSF54849	InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02348	UniParc:UPI0004EDC16A	SEG:seg

Description

BnaC03g37960D

Coordinates

chrLK031805:+:102105..105509

Molecular Weight (calculated)

62914.2 Da

IEP (calculated)

6.560

GRAVY (calculated)

-0.032

Length

593 amino acids

Sequence
(BLAST)

001: MASIFTATSS LGPLVAPISP KLSSATSISS SSFGRRQNVC PRRPRPAIVC AAKELHFNKD GSTIKKLQTG VNKLANLVGV TLGPKGRNVV LESKYGSPKI
101: VNDGVTVARE VELEDPVENI GAKLVRQAAA KTNDLAGDGT TTSVVLAQGF IAEGVKVVAA GANPVLITRG IEKTAKALVH ELKLMSKEVE DSELADVAAV
201: SAGNNLEVGN MIAEAMSKVG RKGVVTLEEG KSAENHLYVV EGMQFDRGYI SPYFVTDTEK MSVEYENCKL LLVDKKVTNA RDLVGVLEDA IRGGYPILII
301: AEDIEQEALA TLVVNKLRGT LKIAALKAPG FGERKSQYLD DIAILTGATV IREEVGLSLD KAGKEVLGNA SKVVLTKEMT TIVGDGSTQE AVNKRVVQIK
401: NLIEQAEQDY EKEKLNERIA KLSGGVAVIQ VGAQTETELK EKKLRVEDAL NATKAAVAEG IVVGGGCTLL RLAAKVDAIK DTLGNDEEKV GAEIVKRALR
501: YPLKLIAKNA GVNGSVVSEK VLANDNVKFG YNAATGKYED LMAAGIIDPT KVVRCCLEHA ASVAKTFLMS DCVVVEIKEP EPVPVGNPMD NSG

Best Arabidopsis Sequence Match ( AT3G13470.1 )
(BLAST)

001: MASTFTATSS LGSLLAPNAI KLSSATSISS SSFGRRHNVC VRRSRPAIVC AAKELHFNKD GTTIRKLQTG VNKLADLVGV TLGPKGRNVV LESKYGSPRI
101: VNDGVTVARE VELEDPVENI GAKLVRQAAA KTNDLAGDGT TTSVVLAQGF IAEGVKVVAA GANPVLITRG IEKTAKALVN ELKLMSKEVE DSELADVAAV
201: SAGNNHEVGS MIAEAMSKVG RKGVVTLEEG KSAENNLYVV EGMQFDRGYI SPYFVTDSEK MSVEYDNCKL LLVDKKVTNA RDLVGVLEDA IRGGYPILII
301: AEDIEQEALA TLVVNKLRGT LKIAALKAPG FGERKSQYLD DIAILTGATV IREEVGLSLD KAGKEVLGNA SKVVLTKEMT TIVGDGTTQE AVNKRVVQIR
401: NLIEQAEQDY EKEKLNERIA KLSGGVAVIQ VGAQTETELK EKKLRVEDAL NATKAAVEEG IVVGGGCTLL RLASKVDAIK DTLENDEEKV GAEIVKRALS
501: YPLKLIAKNA GVNGSVVSEK VLANDNVKFG YNAATGKYED LMAAGIIDPT KVVRCCLEHA ASVAKTFLMS DCVVVEIPEP EPVPAGNPMD NSGYGY

Arabidopsis Description

CPN60B2Chaperonin 60 subunit beta 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LJE4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.