Factsheet for Zm00001d054089_P002

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG29249	Sorghum	plastid	95.14	97.19
TraesCS6B01G012000.1	Wheat	cytosol	61.91	92.94
Os02t0102900-01	Rice	plastid	89.95	92.81
TraesCS6A01G006400.1	Wheat	golgi	87.84	90.64
TraesCS6D01G009100.1	Wheat	golgi	87.68	90.47
HORVU4Hr1G076680.1	Barley	cytosol	28.85	89.9
TraesCS6B01G011800.1	Wheat	plastid	86.22	89.71
TraesCS6B01G012100.3	Wheat	plastid	86.87	89.33
HORVU5Hr1G074160.1	Barley	cytosol	28.04	88.72
HORVU2Hr1G107410.2	Barley	cytosol	28.69	88.5
Zm00001d035937_P001	Maize	plastid	80.39	85.66
Zm00001d017567_P001	Maize	cytosol	22.37	83.64
Zm00001d045544_P002	Maize	plastid	80.71	83.0
TraesCS6B01G039300.2	Wheat	plastid	80.39	82.94
TraesCS6D01G031400.1	Wheat	plastid	80.23	82.78
GSMUA_Achr9P23240_001	Banana	plastid	82.01	82.68
TraesCS6A01G028100.1	Wheat	plastid	80.06	82.61
HORVU6Hr1G005220.3	Barley	plastid	80.06	82.61
KRH13605	Soybean	nucleus	78.61	82.06
KRH43861	Soybean	plastid	78.61	81.93
GSMUA_Achr3P27620_001	Banana	plastid	81.04	81.7
CDX82537	Canola	plastid	77.63	81.6
Bra001507.1-P	Field mustard	plastid	77.96	81.53
AT3G13470.1	Thale cress	plastid	78.61	81.38
CDX75715	Canola	cytosol	74.23	81.35
CDX75713	Canola	plastid	77.96	81.11
Solyc01g028810.2.1	Tomato	plastid	78.12	80.47
PGSC0003DMT400061700	Potato	extracellular	78.12	80.47
Bra028922.1-P	Field mustard	plastid	76.99	80.37
CDY32855	Canola	plastid	77.15	80.13
VIT_06s0004g00240.t01	Wine grape	plastid	78.93	80.1
AT5G56500.2	Thale cress	plastid	77.47	80.07
AT1G55490.3	Thale cress	plastid	77.8	80.0
CDY08245	Canola	plastid	77.63	79.83
CDY11918	Canola	plastid	76.82	79.66
VIT_09s0002g03930.t01	Wine grape	plastid	78.44	79.47
Bra011919.1-P	Field mustard	plastid	77.96	79.11
CDY36809	Canola	plastid	76.66	77.92
Zm00001d016540_P001	Maize	cytosol	12.97	76.92
HORVU6Hr1G000180.2	Barley	plastid	80.88	76.65
CDY26100	Canola	plastid	77.8	76.43
Solyc03g120850.2.1	Tomato	plastid	74.39	75.87
PGSC0003DMT400006501	Potato	plastid	74.23	75.7
HORVU4Hr1G066820.2	Barley	cytosol	28.2	74.04
Zm00001d053279_P001	Maize	mitochondrion	18.48	72.61
Zm00001d046709_P001	Maize	mitochondrion	18.15	71.34
CDX72433	Canola	endoplasmic reticulum	35.82	69.94
Bra030858.1-P	Field mustard	cytosol	77.47	69.38
CDY02438	Canola	cytosol	77.31	68.44
Zm00001d037526_P001	Maize	plastid	18.96	66.1
CDY23605	Canola	cytosol	45.7	64.98
CDY32775	Canola	cytosol	8.43	61.18
CDY56074	Canola	plastid	45.54	59.16
Zm00001d028409_P001	Maize	plastid	55.59	58.33
CDY10557	Canola	endoplasmic reticulum, plastid	77.47	57.66
CDY43988	Canola	cytosol	46.19	55.45
Bra027431.1-P	Field mustard	cytosol	46.35	55.11
CDY10302	Canola	extracellular	5.02	47.69
Zm00001d000399_P001	Maize	plastid	45.06	47.6
Zm00001d034919_P001	Maize	plastid	44.57	47.09
Zm00001d014090_P002	Maize	mitochondrion	43.11	46.1
CDX86994	Canola	mitochondrion, plastid	52.19	45.87
Zm00001d032789_P001	Maize	plastid	42.63	45.66
Zm00001d038857_P001	Maize	mitochondrion	42.14	44.83
CDY40825	Canola	endoplasmic reticulum, vacuole	14.59	42.25
Zm00001d031503_P001	Maize	endoplasmic reticulum	8.1	40.32
Zm00001d051252_P001	Maize	cytosol	12.32	37.07
Zm00001d013912_P001	Maize	mitochondrion	7.62	36.72
CDX85007	Canola	cytosol, plastid	40.68	25.0
Zm00001d005373_P001	Maize	plastid	37.76	19.4
Os02t0103100-01	Rice	plasma membrane, vacuole	0.49	2.05

Protein Annotations

MapMan:1.1.8.1.6.2.2	Gene3D:1.10.560.10	MapMan:1.2.1.2.1.2	MapMan:19.1.7.1	Gene3D:3.30.260.10	Gene3D:3.50.7.10
UniProt:A0A1D6QV85	ProteinID:AQK61254.1	InterPro:Chaperonin_Cpn60_CS	InterPro:Chaprnin_Cpn60	ncoils:Coil	InterPro:Cpn60/TCP-1
GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006457	GO:GO:0008150	GO:GO:0009987	GO:GO:0042026
InterPro:GROEL-like_equatorial_sf	InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409	InterPro:IPR027410	InterPro:IPR027413	HAMAP:MF_00600
PFAM:PF00118	PRINTS:PR00298	ScanProsite:PS00296	PANTHER:PTHR11353	PANTHER:PTHR11353:SF102	SUPFAM:SSF48592
SUPFAM:SSF52029	SUPFAM:SSF54849	InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02348	UniParc:UPI0008433C97	EnsemblPlantsGene:Zm00001d054089
EnsemblPlants:Zm00001d054089_P002	EnsemblPlants:Zm00001d054089_T002	SEG:seg	:	:	:

Description

Putative TCP-1/cpn60 chaperonin family protein isoform 1%3B Putative TCP-1/cpn60 chaperonin family protein isoform 2

Coordinates

chr4:-:246276749..246281182

Molecular Weight (calculated)

65552.7 Da

IEP (calculated)

5.915

GRAVY (calculated)

-0.120

Length

617 amino acids

Sequence
(BLAST)

001: MASAFGTAST CGIKHAPAGV ALAAPMKHLS LVSPSLVSLP RKMRPRRKYN FRVNAAKELH FNKDGSAIRK MQNGVNKLAD LVGVTLGPKG RNVVLESKYG
101: SPKIVNDGVT VAKEVELEDP VENIGAKLVR QAAAKTNDLA GDGTTTSVVL AQGMITEGVK VVAAGANPVQ ITRGIEKTAK ALVSELQKMS KEVEDSELAD
201: VAAVSAGNNY EIGNMIAEAM KKVGRQGVVT LEEGKSAENN LYSVEGMQFD RGYISPYFVT DSEKMTVEYE NCKLLLVDKK INNARDLITI LEDAIRSGYP
301: ILIVAEDIEQ EALATLVVNR LRGALKIAAI KAPGFGERKS QYLDDIATLT GGTVIREEVG LSLDKADNAV LGTAAKVVVT KDSTTIVGDG TTQEEVNKRV
401: TQIKNQIEAT EQEYEREKLN ERIAKLSGGV AVIQVGAQTE TELKEKKLRV EDALNATKVN ATYGGSHSIP AAVEEGIVVG GGCTLLRLAS KVDAIIETLE
501: NDEQKVGAEI VRKSLSYPLK LIAKNAGVNG SVVTEKVLAN ENFRYGYNAA TGEYEDLMAA GIIDPTKVVR CCLEHAASVA KTFITSDAVV VDAKVAEQAP
601: SSPANPMAMG GGSGFGF

Best Arabidopsis Sequence Match ( AT1G55490.1 )
(BLAST)

001: MASTFTATSS IGSMVAPNGH KSDKKLISKL SSSSFGRRQS VCPRPRRSSS AIVCAAKELH FNKDGTTIRR LQAGVNKLAD LVGVTLGPKG RNVVLESKYG
101: SPRIVNDGVT VAREVELEDP VENIGAKLVR QAAAKTNDLA GDGTTTSVVL AQGFIAEGVK VVAAGANPVL ITRGIEKTAK ALVTELKKMS KEVEDSELAD
201: VAAVSAGNND EIGNMIAEAM SKVGRKGVVT LEEGKSAENN LYVVEGMQFD RGYISPYFVT DSEKMSVEFD NCKLLLVDKK ITNARDLVGV LEDAIRGGYP
301: ILIIAEDIEQ EALATLVVNK LRGTLKIAAL RAPGFGERKS QYLDDIAILT GATVIREEVG LSLDKAGKEV LGNASKVVLT KETSTIVGDG STQDAVKKRV
401: TQIKNLIEQA EQDYEKEKLN ERIAKLSGGV AVIQVGAQTE TELKEKKLRV EDALNATKAA VEEGIVVGGG CTLLRLASKV DAIKATLDND EEKVGADIVK
501: RALSYPLKLI AKNAGVNGSV VSEKVLSNDN VKFGYNAATG KYEDLMAAGI IDPTKVVRCC LEHAASVAKT FLMSDCVVVE IKEPEPVPVG NPMDNSGYGY

Arabidopsis Description

CPN60B1LEN1 [Source:UniProtKB/TrEMBL;Acc:A0A178W724]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.