CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY08245	Canola	plastid	68.42	54.17
HORVU4Hr1G076680.1	Barley	cytosol	22.53	54.04
HORVU5Hr1G074160.1	Barley	cytosol	22.11	53.85
AT1G55490.3	Thale cress	plastid	67.58	53.5
HORVU2Hr1G107410.2	Barley	cytosol	22.32	53.0
CDY26100	Canola	plastid	68.63	51.91
CDX75713	Canola	plastid	64.63	51.77
CDX82537	Canola	plastid	63.58	51.45
PGSC0003DMT400061700	Potato	extracellular	62.74	49.75
Solyc01g028810.2.1	Tomato	plastid	62.74	49.75
EER89076	Sorghum	plastid	60.21	49.4
Zm00001d035937_P001	Maize	plastid	60.21	49.4
CDX75715	Canola	cytosol	58.53	49.38
CDY32855	Canola	plastid	61.26	48.99
HORVU7Hr1G006490.2	Barley	cytosol	56.84	48.74
KRH43861	Soybean	plastid	60.42	48.48
CDY11918	Canola	plastid	60.63	48.4
Os06t0114000-02	Rice	plastid	61.05	48.25
KRH13605	Soybean	nucleus	60.0	48.22
GSMUA_Achr9P23240_001	Banana	plastid	61.68	47.88
Zm00001d045544_P002	Maize	plastid	60.42	47.83
TraesCS4A01G452700.2	Wheat	plastid	58.53	47.6
TraesCS6A01G006400.1	Wheat	golgi	59.58	47.32
CDY36809	Canola	plastid	60.21	47.12
CDY02438	Canola	cytosol	69.05	47.06
GSMUA_Achr3P27620_001	Banana	plastid	60.63	47.06
TraesCS6D01G009100.1	Wheat	golgi	58.95	46.82
Os02t0102900-01	Rice	plastid	58.95	46.82
TraesCS7A01G036200.2	Wheat	golgi	60.84	46.61
TraesCS6B01G011800.1	Wheat	plastid	58.11	46.54
KXG29249	Sorghum	plastid	59.16	46.52
TraesCS6B01G012100.3	Wheat	plastid	58.53	46.33
TraesCS7D01G032800.1	Wheat	cytosol	60.84	45.95
Zm00001d054089_P002	Maize	plastid	59.16	45.54
TraesCS6A01G028100.1	Wheat	plastid	57.05	45.32
TraesCS6D01G031400.1	Wheat	plastid	56.84	45.15
HORVU6Hr1G005220.3	Barley	plastid	56.63	44.98
TraesCS6B01G039300.2	Wheat	plastid	56.63	44.98
HORVU4Hr1G066820.2	Barley	cytosol	22.11	44.68
HORVU6Hr1G000180.2	Barley	plastid	58.53	42.7
GSMUA_Achr11P...	Banana	plastid	61.05	41.67
TraesCS6B01G012000.1	Wheat	cytosol	34.74	40.15
CDY10557	Canola	endoplasmic reticulum, plastid	69.05	39.57
CDY23605	Canola	cytosol	35.37	38.71
CDY20555	Canola	plastid	47.16	36.9
CDY66193	Canola	plastid	46.74	36.57
CDX72433	Canola	endoplasmic reticulum	24.0	36.08
CDY32775	Canola	cytosol	6.11	34.12
CDY31193	Canola	plastid	16.42	32.91
CDY43988	Canola	cytosol	35.37	32.68
CDX79518	Canola	cytosol	13.68	32.18
CDY72107	Canola	mitochondrion	20.21	31.27
CDX83280	Canola	plastid	36.84	30.07
CDY31190	Canola	plastid	37.05	30.03
CDY30514	Canola	plastid	36.63	29.74
CDY04527	Canola	plastid	36.63	29.19
CDX84697	Canola	mitochondrion	34.11	28.77
CDX94835	Canola	mitochondrion	34.74	28.6
CDX71396	Canola	plastid	31.58	28.36
CDX77147	Canola	plastid	36.84	28.14
CDY59049	Canola	mitochondrion	12.84	27.98
CDY02601	Canola	plastid	33.68	27.68
CDY47184	Canola	plastid	33.68	27.68
CDX93002	Canola	mitochondrion	32.0	27.64
CDY17152	Canola	mitochondrion	33.26	27.53
CDX75733	Canola	mitochondrion	32.84	27.27
CDX82514	Canola	mitochondrion	32.84	27.27
CDY19471	Canola	mitochondrion	33.05	26.48
Zm00001d016540_P001	Maize	cytosol	5.68	25.96
CDY40825	Canola	endoplasmic reticulum, vacuole	11.16	24.88
CDX86994	Canola	mitochondrion, plastid	36.0	24.36
CDY68896	Canola	cytosol	17.26	24.33
Zm00001d053279_P001	Maize	mitochondrion	7.58	22.93
Zm00001d046709_P001	Maize	mitochondrion	7.58	22.93
CDY66712	Canola	mitochondrion	28.84	22.72
CDY37741	Canola	mitochondrion	29.05	22.59
CDY59050	Canola	cytosol	14.95	21.01
Zm00001d037526_P001	Maize	plastid	7.58	20.34
CDY10302	Canola	extracellular	2.11	15.38
CDX85007	Canola	cytosol, plastid	31.79	15.04
CDY56079	Canola	plastid	2.53	8.96
Os02t0103100-01	Rice	plasma membrane, vacuole	0.0	0.0

Protein Annotations

Gene3D:1.10.560.10	Gene3D:3.30.260.10	Gene3D:3.50.7.10	MapMan:35.1	GO:A0A078IZS3	UniProt:A0A078IZS3
EnsemblPlants:CDY56074	ProteinID:CDY56074	ProteinID:CDY56074.1	InterPro:Chaperonin_Cpn60_CS	InterPro:Chaprnin_Cpn60	InterPro:Cpn60/TCP-1
GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006457	GO:GO:0008150	GO:GO:0009987	GO:GO:0042026
InterPro:GROEL-like_equatorial_sf	EnsemblPlantsGene:GSBRNA2T00017789001	InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409	InterPro:IPR027410	InterPro:IPR027413
PFAM:PF00118	PRINTS:PR00298	ScanProsite:PS00296	PANTHER:PTHR11353	PANTHER:PTHR11353:SF8	SUPFAM:SSF48592
SUPFAM:SSF54849	InterPro:TCP-1-like_intermed_sf	UniParc:UPI0004EF05CE	:	:	:

Description

BnaC06g41650DBnaC06g41650D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IZS3]

Coordinates

chrLK033455:-:763..6366

Molecular Weight (calculated)

52344.9 Da

IEP (calculated)

9.965

GRAVY (calculated)

-0.079

Length

475 amino acids

Sequence
(BLAST)

001: MASTFTATSS IGSMVATKGH RSDNKLMNNL SSSSFGRRQN VFPRLRRSSP AIAGVNKLAY LVGVTLGPKG RNAVLESKHG SPRIVNDGVT VVREVELEDP
101: VENIGAKLVR QAAAKTNDFA GDGTTTSVVL AQGFIAEGVK VVAAGANSVL ITRGIEKTAK ALVAELKKML KTVSLQMWQL LVQVTMSRVG RKGVVTLEEG
201: KSAENVLYVV EGMQFDRGYV SPYFVIDNEK MSVEFDNCKL LLVDKKITKA RDLVGEKEKV NERIAKLSGG VVVIQVGAQT ETELKEKKLR DEDALNATKV
301: IFLLLRMSII RQAAVEEGIF VGGGCTLLRL ASKVDAIKVA LDNDELKGTE SWLYICIWKK LNQGLDGTLI DERFIKLLHE CSHPLFCVFL NYIRCLKSCL
401: LSLGQVLSNE NVKFGYNAAT GKYEDLMAAG IIDPTKLRLQ RHSRCQTVLL LRSRNLSQFQ QATQWTTQDM DTKRR

Best Arabidopsis Sequence Match ( AT1G55490.1 )
(BLAST)

001: MASTFTATSS IGSMVAPNGH KSDKKLISKL SSSSFGRRQS VCPRPRRSSS AIVCAAKELH FNKDGTTIRR LQAGVNKLAD LVGVTLGPKG RNVVLESKYG
101: SPRIVNDGVT VAREVELEDP VENIGAKLVR QAAAKTNDLA GDGTTTSVVL AQGFIAEGVK VVAAGANPVL ITRGIEKTAK ALVTELKKMS KEVEDSELAD
201: VAAVSAGNND EIGNMIAEAM SKVGRKGVVT LEEGKSAENN LYVVEGMQFD RGYISPYFVT DSEKMSVEFD NCKLLLVDKK ITNARDLVGV LEDAIRGGYP
301: ILIIAEDIEQ EALATLVVNK LRGTLKIAAL RAPGFGERKS QYLDDIAILT GATVIREEVG LSLDKAGKEV LGNASKVVLT KETSTIVGDG STQDAVKKRV
401: TQIKNLIEQA EQDYEKEKLN ERIAKLSGGV AVIQVGAQTE TELKEKKLRV EDALNATKAA VEEGIVVGGG CTLLRLASKV DAIKATLDND EEKVGADIVK
501: RALSYPLKLI AKNAGVNGSV VSEKVLSNDN VKFGYNAATG KYEDLMAAGI IDPTKVVRCC LEHAASVAKT FLMSDCVVVE IKEPEPVPVG NPMDNSGYGY

Arabidopsis Description

CPN60B1LEN1 [Source:UniProtKB/TrEMBL;Acc:A0A178W724]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.