Factsheet for TraesCS6A01G028100.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G031400.1	Wheat	plastid	97.99	97.99
TraesCS6B01G039300.2	Wheat	plastid	96.66	96.66
HORVU6Hr1G005220.3	Barley	plastid	96.32	96.32
TraesCS6A01G006400.1	Wheat	golgi	84.11	84.11
KXG29249	Sorghum	plastid	84.11	83.28
Os02t0102900-01	Rice	plastid	82.78	82.78
Zm00001d054089_P002	Maize	plastid	82.61	80.06
TraesCS4A01G452700.2	Wheat	plastid	76.09	77.91
GSMUA_Achr9P23240_001	Banana	plastid	79.1	77.29
GSMUA_Achr3P27620_001	Banana	plastid	78.6	76.8
KRH13605	Soybean	nucleus	75.59	76.48
KRH43861	Soybean	plastid	75.59	76.35
Bra001507.1-P	Field mustard	plastid	75.25	76.27
CDX82537	Canola	plastid	74.75	76.15
AT3G13470.1	Thale cress	plastid	75.75	76.01
CDX75713	Canola	plastid	75.25	75.89
AT1G55490.3	Thale cress	plastid	76.09	75.83
VIT_06s0004g00240.t01	Wine grape	plastid	76.59	75.33
CDY08245	Canola	plastid	75.42	75.17
TraesCS7A01G036200.2	Wheat	golgi	77.93	75.16
CDX75715	Canola	cytosol	70.74	75.13
Bra028922.1-P	Field mustard	plastid	74.25	75.13
Solyc01g028810.2.1	Tomato	plastid	75.25	75.13
PGSC0003DMT400061700	Potato	extracellular	75.25	75.13
AT5G56500.2	Thale cress	plastid	74.92	75.04
CDY32855	Canola	plastid	74.25	74.75
CDY11918	Canola	plastid	74.25	74.62
Bra011919.1-P	Field mustard	plastid	75.75	74.51
VIT_09s0002g03930.t01	Wine grape	plastid	75.42	74.06
CDY36809	Canola	plastid	73.91	72.82
CDY26100	Canola	plastid	75.75	72.13
Solyc03g120850.2.1	Tomato	plastid	71.57	70.74
PGSC0003DMT400006501	Potato	plastid	71.4	70.58
Bra030858.1-P	Field mustard	cytosol	75.42	65.46
CDX72433	Canola	endoplasmic reticulum	34.28	64.87
CDY02438	Canola	cytosol	75.08	64.42
CDY32775	Canola	cytosol	9.03	63.53
CDY23605	Canola	cytosol	44.65	61.52
CDY56074	Canola	plastid	45.32	57.05
CDY10557	Canola	endoplasmic reticulum, plastid	75.25	54.28
TraesCS2A01G311700.1	Wheat	plastid	57.19	52.78
CDY43988	Canola	cytosol	44.98	52.33
Bra027431.1-P	Field mustard	cytosol	45.15	52.02
CDY10302	Canola	extracellular	5.52	50.77
TraesCS4A01G315500.2	Wheat	plastid	46.82	47.78
TraesCS4A01G409100.1	Wheat	mitochondrion	41.64	43.23
TraesCS1A01G361400.1	Wheat	mitochondrion	41.81	43.18
TraesCS1A01G145000.1	Wheat	mitochondrion	40.97	42.68
CDX86994	Canola	mitochondrion, plastid	50.0	42.59
CDY40825	Canola	endoplasmic reticulum, vacuole	13.88	38.97
TraesCS5A01G366800.1	Wheat	plastid	38.46	38.92
CDX85007	Canola	cytosol, plastid	40.8	24.3
Os02t0103100-01	Rice	plasma membrane, vacuole	0.33	1.37

Protein Annotations

MapMan:1.1.8.1.6.2.2	Gene3D:1.10.560.10	MapMan:1.2.1.2.1.2	MapMan:19.1.7.1	Gene3D:3.30.260.10	Gene3D:3.50.7.10
InterPro:Chaperonin_Cpn60_CS	InterPro:Chaprnin_Cpn60	ncoils:Coil	InterPro:Cpn60/TCP-1	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006457	GO:GO:0008150	GO:GO:0009987	GO:GO:0042026	InterPro:GROEL-like_equatorial_sf	InterPro:GroEL-like_apical_dom_sf
InterPro:IPR027409	InterPro:IPR027410	InterPro:IPR027413	HAMAP:MF_00600	PFAM:PF00118	PRINTS:PR00298
ScanProsite:PS00296	PANTHER:PTHR11353	PANTHER:PTHR11353:SF102	SUPFAM:SSF48592	SUPFAM:SSF52029	SUPFAM:SSF54849
InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02348	EnsemblPlantsGene:TraesCS6A01G028100	EnsemblPlants:TraesCS6A01G028100.1	TIGR:cd03344	SEG:seg

Description

No Description!

Coordinates

chr6A:-:14373422..14377113

Molecular Weight (calculated)

64022.4 Da

IEP (calculated)

7.905

GRAVY (calculated)

-0.047

Length

598 amino acids

Sequence
(BLAST)

001: MASPFCGIST CGLNAAAPTG FSSKRTLSLV SPTFVSLAQE IRPRRRCNFR VNAAKELYFN KDGLAMRKLQ NGVNKLANLV GVTLGPKGRN VVLENKYGPP
101: RIVNDGVTVA KEVELEDPVE NIGAKLVRQA AAKTNDLAGD GTTTSVILAQ GMITEGVKIV GAGANPVQIA RGIEKTAKAL VYELQKMSKE VKDSELVDVA
201: AVSAGNDYAI GNMIADAVSK VGRHGVVTLE EGKSSENSLY VVEGMRFDRG YISPYFVTDG ERMTVEYNNC KLLLVDKKIN SAKDLITILE DAITSGYPVL
301: IIAEDIEQEA LAALVLNRLR GSLQIAAIRA PGFGERRSQY LDDIATLTGG TVIRDEFGVP LHKADKTVLG TAAKVVITKD STTIIGDGTT QEEVIKRVTQ
401: IKNQIEATEH EYEKEKLKER IAKLYGGVAI IQVGAQTETE LKEKKLRVED ALNATKAAVE EGIVVGGGCT LIRLASKVDA IKQTLENDEQ KVGAEIVRKS
501: LSYPLKLIAK NAGINGSVVI EKVLAIDNSS YGYNAATGKY EDLMAAGIID PTKVVRCCLE HAASVAKTFI TSDAVVVDIR APKCAPVVNP MCGSGYGF

Best Arabidopsis Sequence Match ( AT1G55490.1 )
(BLAST)

001: MASTFTATSS IGSMVAPNGH KSDKKLISKL SSSSFGRRQS VCPRPRRSSS AIVCAAKELH FNKDGTTIRR LQAGVNKLAD LVGVTLGPKG RNVVLESKYG
101: SPRIVNDGVT VAREVELEDP VENIGAKLVR QAAAKTNDLA GDGTTTSVVL AQGFIAEGVK VVAAGANPVL ITRGIEKTAK ALVTELKKMS KEVEDSELAD
201: VAAVSAGNND EIGNMIAEAM SKVGRKGVVT LEEGKSAENN LYVVEGMQFD RGYISPYFVT DSEKMSVEFD NCKLLLVDKK ITNARDLVGV LEDAIRGGYP
301: ILIIAEDIEQ EALATLVVNK LRGTLKIAAL RAPGFGERKS QYLDDIAILT GATVIREEVG LSLDKAGKEV LGNASKVVLT KETSTIVGDG STQDAVKKRV
401: TQIKNLIEQA EQDYEKEKLN ERIAKLSGGV AVIQVGAQTE TELKEKKLRV EDALNATKAA VEEGIVVGGG CTLLRLASKV DAIKATLDND EEKVGADIVK
501: RALSYPLKLI AKNAGVNGSV VSEKVLSNDN VKFGYNAATG KYEDLMAAGI IDPTKVVRCC LEHAASVAKT FLMSDCVVVE IKEPEPVPVG NPMDNSGYGY

Arabidopsis Description

CPN60B1LEN1 [Source:UniProtKB/TrEMBL;Acc:A0A178W724]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.