CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 1
plastid 10

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d054089_P002	Maize	plastid	97.19	95.14
Os02t0102900-01	Rice	plastid	93.38	94.31
TraesCS6B01G012000.1	Wheat	cytosol	63.91	93.92
HORVU4Hr1G076680.1	Barley	cytosol	30.13	91.92
TraesCS6A01G006400.1	Wheat	golgi	90.56	91.47
TraesCS6D01G009100.1	Wheat	golgi	90.4	91.3
HORVU2Hr1G107410.2	Barley	cytosol	29.97	90.5
TraesCS6B01G011800.1	Wheat	plastid	88.74	90.39
HORVU5Hr1G074160.1	Barley	cytosol	29.14	90.26
TraesCS6B01G012100.3	Wheat	plastid	89.4	90.0
EER89076	Sorghum	plastid	82.45	86.01
TraesCS6A01G028100.1	Wheat	plastid	83.28	84.11
TraesCS6B01G039300.2	Wheat	plastid	83.28	84.11
GSMUA_Achr9P23240_001	Banana	plastid	85.1	83.99
TraesCS6D01G031400.1	Wheat	plastid	83.11	83.95
HORVU6Hr1G005220.3	Barley	plastid	82.78	83.61
KRH13605	Soybean	nucleus	81.29	83.08
GSMUA_Achr3P27620_001	Banana	plastid	84.11	83.01
KRH43861	Soybean	plastid	81.29	82.94
CDX82537	Canola	plastid	80.46	82.79
Bra001507.1-P	Field mustard	plastid	80.79	82.71
AT3G13470.1	Thale cress	plastid	81.29	82.38
CDX75715	Canola	cytosol	76.66	82.24
CDX75713	Canola	plastid	80.63	82.12
Bra028922.1-P	Field mustard	plastid	79.64	81.39
CDY32855	Canola	plastid	79.97	81.31
VIT_06s0004g00240.t01	Wine grape	plastid	81.79	81.25
AT5G56500.2	Thale cress	plastid	80.3	81.24
Solyc01g028810.2.1	Tomato	plastid	80.46	81.14
PGSC0003DMT400061700	Potato	extracellular	80.46	81.14
AT1G55490.3	Thale cress	plastid	80.46	81.0
CDY08245	Canola	plastid	80.46	81.0
CDY11918	Canola	plastid	79.64	80.84
VIT_09s0002g03930.t01	Wine grape	plastid	81.29	80.62
Bra011919.1-P	Field mustard	plastid	80.79	80.26
CDY36809	Canola	plastid	79.47	79.08
HORVU6Hr1G000180.2	Barley	plastid	83.61	77.57
CDY26100	Canola	plastid	80.46	77.39
Solyc03g120850.2.1	Tomato	plastid	76.99	76.86
PGSC0003DMT400006501	Potato	plastid	76.82	76.69
HORVU4Hr1G066820.2	Barley	cytosol	28.97	74.47
Bra030858.1-P	Field mustard	cytosol	80.13	70.25
CDX72433	Canola	endoplasmic reticulum	36.59	69.94
CDY02438	Canola	cytosol	79.97	69.3
CDY32775	Canola	cytosol	9.27	65.88
CDY23605	Canola	cytosol	47.02	65.44
CDY56074	Canola	plastid	46.52	59.16
CDY10557	Canola	endoplasmic reticulum, plastid	80.13	58.38
CDY43988	Canola	cytosol	47.35	55.64
Bra027431.1-P	Field mustard	cytosol	47.52	55.3
CDY10302	Canola	extracellular	5.3	49.23
EES19317	Sorghum	plastid	46.69	48.87
EER90466	Sorghum	plastid	46.69	48.62
EER94121	Sorghum	mitochondrion	44.7	46.79
CDX86994	Canola	mitochondrion, plastid	53.97	46.44
KXG40202	Sorghum	cytosol	30.96	45.95
EES19881	Sorghum	mitochondrion	43.21	44.92
CDY40825	Canola	endoplasmic reticulum, vacuole	14.9	42.25
EER96340	Sorghum	plastid	39.07	40.34
CDX85007	Canola	cytosol, plastid	42.55	25.6
Os02t0103100-01	Rice	plasma membrane, vacuole	0.5	2.05

Protein Annotations

MapMan:1.1.8.1.6.2.2	Gene3D:1.10.560.10	MapMan:1.2.1.2.1.2	MapMan:19.1.7.1	Gene3D:3.30.260.10	Gene3D:3.50.7.10
UniProt:A0A194YN38	InterPro:Chaperonin_Cpn60_CS	InterPro:Chaprnin_Cpn60	ncoils:Coil	InterPro:Cpn60/TCP-1	GO:GO:0000166
GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006457	GO:GO:0008150	GO:GO:0009987	GO:GO:0042026	InterPro:GROEL-like_equatorial_sf
InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409	InterPro:IPR027410	InterPro:IPR027413	EnsemblPlants:KXG29249	ProteinID:KXG29249
ProteinID:KXG29249.1	ProteinID:KXG29250.1	HAMAP:MF_00600	PFAM:PF00118	PRINTS:PR00298	ScanProsite:PS00296
PANTHER:PTHR11353	PANTHER:PTHR11353:SF102	EnsemblPlantsGene:SORBI_3004G002200	SUPFAM:SSF48592	SUPFAM:SSF52029	SUPFAM:SSF54849
InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02348	UniParc:UPI0001C80CF4	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr4:-:172468..177192

Molecular Weight (calculated)

64243.4 Da

IEP (calculated)

5.758

GRAVY (calculated)

-0.113

Length

604 amino acids

Sequence
(BLAST)

001: MASAFGTGTA STCGIKPAPT GVALAAPKMH LSLVSPSLVS LPRKMRPQRK CNFRVNAAKE LHFNKDGSAI RKLQNGVNKL ADLVGVTLGP KGRNVVLESK
101: YGSPKIVNDG VTVAKEVELE DPVENIGAKL VRQAAAKTND LAGDGTTTSV VLAQGMITEG VKVVAAGANP VQITRGIEKT AKALVSELQK MSKEVEDSEL
201: ADVAAVSAGN NYEIGNMIAE AMKKVGRQGV VTLEEGKSAE NNLYVVEGMQ FDRGYISPYF VTDSEKMTVE YENCKLLLVD KKINNARDLI TILEDAIRSG
301: YPILIVAEDI EQEALATLVV NRLRGALKIA AIKAPGFGER KSQYLDDIAT LTGGTVIREE VGLSLDKADN QVLGTAAKVV VTKDSTTIVG DGTTQEEVNK
401: RVTQIKNQIE ATEQEYEKEK LNERIAKLSG GVAVIQVGAQ TETELKEKKL RVEDALNATK AAVEEGIVVG GGCTLLRLSS KVDAIIETLE NDEQKVGAEI
501: VRKSLSYPLK LIAKNAGVNG SVVTEKVLAN ENFRYGYNAA TGKYEDLMAA GIIDPTKVVR CCLEHAASVA KTFITSDAVV VDIKVPEQAP APANPMAGGS
601: GFGF

Best Arabidopsis Sequence Match ( AT3G13470.1 )
(BLAST)

001: MASTFTATSS LGSLLAPNAI KLSSATSISS SSFGRRHNVC VRRSRPAIVC AAKELHFNKD GTTIRKLQTG VNKLADLVGV TLGPKGRNVV LESKYGSPRI
101: VNDGVTVARE VELEDPVENI GAKLVRQAAA KTNDLAGDGT TTSVVLAQGF IAEGVKVVAA GANPVLITRG IEKTAKALVN ELKLMSKEVE DSELADVAAV
201: SAGNNHEVGS MIAEAMSKVG RKGVVTLEEG KSAENNLYVV EGMQFDRGYI SPYFVTDSEK MSVEYDNCKL LLVDKKVTNA RDLVGVLEDA IRGGYPILII
301: AEDIEQEALA TLVVNKLRGT LKIAALKAPG FGERKSQYLD DIAILTGATV IREEVGLSLD KAGKEVLGNA SKVVLTKEMT TIVGDGTTQE AVNKRVVQIR
401: NLIEQAEQDY EKEKLNERIA KLSGGVAVIQ VGAQTETELK EKKLRVEDAL NATKAAVEEG IVVGGGCTLL RLASKVDAIK DTLENDEEKV GAEIVKRALS
501: YPLKLIAKNA GVNGSVVSEK VLANDNVKFG YNAATGKYED LMAAGIIDPT KVVRCCLEHA ASVAKTFLMS DCVVVEIPEP EPVPAGNPMD NSGYGY

Arabidopsis Description

CPN60B2Chaperonin 60 subunit beta 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LJE4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.