CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d034919_P001	Maize	plastid	97.76	97.09
Os03t0859600-01	Rice	plastid	48.97	91.03
TraesCS4A01G315500.2	Wheat	plastid	89.83	88.91
TraesCS5D01G550700.1	Wheat	plastid	89.83	88.61
HORVU5Hr1G125130.1	Barley	plastid	89.66	88.59
TraesCS5B01G563900.2	Wheat	plastid	89.48	88.27
Os03t0859700-00	Rice	extracellular, plastid	26.72	83.78
Bra000498.1-P	Field mustard	mitochondrion	76.9	83.36
CDY68896	Canola	cytosol	47.59	81.9
GSMUA_AchrUn_...	Banana	plastid	80.69	81.11
GSMUA_Achr11P...	Banana	plastid	81.9	81.06
KRH25068	Soybean	nucleus	81.38	80.82
EES19317	Sorghum	plastid	79.48	79.9
Bra034383.1-P	Field mustard	plastid	80.52	79.83
Solyc11g069790.1.1	Tomato	plastid	80.86	79.76
CDY30514	Canola	plastid	80.34	79.66
CDX83280	Canola	plastid	79.83	79.55
Bra011985.1-P	Field mustard	plastid	80.17	79.49
VIT_06s0061g00270.t01	Wine grape	plastid	80.0	79.18
CDY31190	Canola	plastid	79.83	79.01
PGSC0003DMT400002933	Potato	cytosol, extracellular, plastid	80.0	78.91
CDY04527	Canola	plastid	80.52	78.36
AT2G28000.1	Thale cress	plastid	78.45	77.65
CDX71396	Canola	plastid	68.97	75.61
KRH30612	Soybean	endoplasmic reticulum	76.55	74.87
CDX77147	Canola	plastid	80.0	74.6
Solyc06g075010.2.1	Tomato	plastid	74.83	73.68
PGSC0003DMT400031301	Potato	plastid	74.48	73.34
EER96340	Sorghum	plastid	56.03	55.56
EER89076	Sorghum	plastid	48.97	49.05
KXG29249	Sorghum	plastid	48.62	46.69
EER94121	Sorghum	mitochondrion	43.28	43.5
KXG40202	Sorghum	cytosol	30.17	43.0
EES19881	Sorghum	mitochondrion	40.0	39.93

Protein Annotations

MapMan:1.1.8.1.6.2.1	Gene3D:1.10.560.10	MapMan:1.2.1.2.1.1	MapMan:19.1.7.1	Gene3D:3.30.260.10	Gene3D:3.50.7.10
EntrezGene:8059238	UniProt:C5WRV5	InterPro:Chaperonin_Cpn60_CS	InterPro:Chaprnin_Cpn60	ncoils:Coil	InterPro:Cpn60/TCP-1
EnsemblPlants:EER90466	ProteinID:EER90466	ProteinID:EER90466.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	GO:GO:0005829	GO:GO:0006457	GO:GO:0006458	GO:GO:0007005	GO:GO:0008150
GO:GO:0009987	GO:GO:0016043	GO:GO:0042026	GO:GO:0044183	GO:GO:0051082	GO:GO:0061077
InterPro:GROEL-like_equatorial_sf	InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409	InterPro:IPR027410	InterPro:IPR027413	HAMAP:MF_00600
PFAM:PF00118	PRINTS:PR00298	ScanProsite:PS00296	PANTHER:PTHR11353	PANTHER:PTHR11353:SF179	EnsemblPlantsGene:SORBI_3001G003100
SUPFAM:SSF48592	SUPFAM:SSF52029	SUPFAM:SSF54849	unigene:Sbi.1066	InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02348
UniParc:UPI0001A82452	RefSeq:XP_002463468.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:278106..282181

Molecular Weight (calculated)

60957.1 Da

IEP (calculated)

4.921

GRAVY (calculated)

0.001

Length

580 amino acids

Sequence
(BLAST)

001: MATIPTTDSG LLLGSSALLR RTRRAASSAR LPAAARRRPQ LLVRASAKEI AFDQGSRASL QAGVEKLAAA VGVTLGPRGR NVVLDEFGTP KVVNDGVTIA
101: RAIELADPME NAGAALIREV ASKTNDSAGD GTTTASVLAR EIIKLGMLSI TSGANPVSVK KGIDKTVQKL VEELEKKSRP VKGSGDIKAV AAISAGNDEF
201: VGTMIAEAID KVGPDGVLSI ESSSSFETTV EVEEGMELDR GYISPQFVTN PEKSTVEFEN ARILVTDQKI SSIKEIIPLL EQTTQLRAPL LIIAEDVSGE
301: ALATLVVNKL RGILNVAAIK APGFGERRKA LLQDIAIVTG AEYQSKDLGL LVENTTVEQL GIARKVTISS SSTTIIADAA SKDDIQARIA QLKRELSQTD
401: SAYDSEKLAE RIAKLSGGVA VIKVGASTEA ELEDRKLRIE DAKNATFAAI EEGIVPGGGA AYVHLSTFVP AIKETLDDPE ERLGADIIQK ALVAPAALIA
501: HNAGVEGEVI VDKIRESEWE FGYNAMADKH ENLVEAGVID PAKVTRCALQ NAASVAGMVL TTQAIVVEKP QKAPAAAAAP

Best Arabidopsis Sequence Match ( AT2G28000.1 )
(BLAST)

001: MASANALSSA SVLCSSRQSK LGGGNQQQGQ RVSYNKRTIR RFSVRANVKE IAFDQHSRAA LQAGIDKLAD CVGLTLGPRG RNVVLDEFGS PKVVNDGVTI
101: ARAIELPNAM ENAGAALIRE VASKTNDSAG DGTTTASILA REIIKHGLLS VTSGANPVSL KRGIDKTVQG LIEELQKKAR PVKGRDDIRA VASISAGNDD
201: LIGSMIADAI DKVGPDGVLS IESSSSFETT VEVEEGMEID RGYISPQFVT NPEKLLAEFE NARVLITDQK ITAIKDIIPI LEKTTQLRAP LLIIAEDVTG
301: EALATLVVNK LRGVLNVVAV KAPGFGERRK AMLQDIAILT GAEYLAMDMS LLVENATIDQ LGIARKVTIS KDSTTLIADA ASKDELQARI AQLKKELFET
401: DSVYDSEKLA ERIAKLSGGV AVIKVGAATE TELEDRKLRI EDAKNATFAA IEEGIVPGGG AALVHLSTVI PAIKETFEDA DERLGADIVQ KALLSPAALI
501: AQNAGVEGEV VVEKIMFSDW ENGYNAMTDT YENLFEAGVI DPAKVTRCAL QNAASVAGMV LTTQAIVVDK PKPKAPAAAA PEGLMV

Arabidopsis Description

CPN60A1SLP [Source:UniProtKB/TrEMBL;Acc:A0A178VZW6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.