Factsheet for TraesCS5B01G563900.2

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G550700.1	Wheat	plastid	99.49	99.49
TraesCS4A01G315500.2	Wheat	plastid	98.81	99.15
HORVU5Hr1G125130.1	Barley	plastid	98.81	98.98
Os03t0859600-01	Rice	plastid	48.98	92.31
EER90466	Sorghum	plastid	88.27	89.48
Zm00001d034919_P001	Maize	plastid	87.76	88.36
Os03t0859700-00	Rice	extracellular, plastid	26.7	84.86
GSMUA_Achr11P...	Banana	plastid	82.65	82.94
Bra000498.1-P	Field mustard	mitochondrion	75.17	82.62
GSMUA_AchrUn_...	Banana	plastid	80.78	82.32
KRH25068	Soybean	nucleus	81.29	81.85
CDY68896	Canola	cytosol	46.77	81.6
VIT_06s0061g00270.t01	Wine grape	plastid	80.95	81.23
Solyc11g069790.1.1	Tomato	plastid	79.93	79.93
PGSC0003DMT400002933	Potato	cytosol, extracellular, plastid	79.42	79.42
CDX83280	Canola	plastid	78.57	79.38
Bra034383.1-P	Field mustard	plastid	78.91	79.32
CDY30514	Canola	plastid	78.74	79.15
CDY31190	Canola	plastid	78.4	78.67
Bra011985.1-P	Field mustard	plastid	78.06	78.46
CDY04527	Canola	plastid	78.4	77.35
AT2G28000.1	Thale cress	plastid	77.04	77.3
KRH30612	Soybean	endoplasmic reticulum	76.36	75.72
Solyc06g075010.2.1	Tomato	plastid	75.68	75.55
PGSC0003DMT400031301	Potato	plastid	75.17	75.04
CDX77147	Canola	plastid	78.4	74.12
CDX71396	Canola	plastid	66.67	74.1
TraesCS5B01G368900.1	Wheat	plastid	56.29	56.1
TraesCS6B01G012000.1	Wheat	cytosol	34.69	49.63
TraesCS6B01G011800.1	Wheat	plastid	47.62	47.22
TraesCS6B01G012100.3	Wheat	plastid	47.96	47.0
TraesCS6B01G039300.2	Wheat	plastid	47.62	46.82
TraesCS4B01G307700.1	Wheat	mitochondrion	42.69	43.58
TraesCS1B01G162300.1	Wheat	mitochondrion	42.35	43.38
TraesCS2B01G328500.3	Wheat	plastid	41.67	41.39
TraesCS1B01G378000.1	Wheat	mitochondrion	39.8	40.14
TraesCS4B01G266200.1	Wheat	cytosol	20.92	29.64

Protein Annotations

MapMan:1.1.8.1.6.2.1	Gene3D:1.10.560.10	MapMan:1.2.1.2.1.1	MapMan:19.1.7.1	Gene3D:3.30.260.10	Gene3D:3.50.7.10
InterPro:Chaperonin_Cpn60_CS	InterPro:Chaprnin_Cpn60	ncoils:Coil	InterPro:Cpn60/TCP-1	GO:GO:0000003	GO:GO:0000166
GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005576	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005829	GO:GO:0005840	GO:GO:0006457
GO:GO:0007275	GO:GO:0008150	GO:GO:0009507	GO:GO:0009536	GO:GO:0009570	GO:GO:0009579
GO:GO:0009658	GO:GO:0009790	GO:GO:0009791	GO:GO:0009793	GO:GO:0009941	GO:GO:0009987
GO:GO:0016020	GO:GO:0016043	GO:GO:0022626	GO:GO:0042026	GO:GO:0048046	InterPro:GROEL-like_equatorial_sf
InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409	InterPro:IPR027410	InterPro:IPR027413	HAMAP:MF_00600	PFAM:PF00118
PRINTS:PR00298	ScanProsite:PS00296	PANTHER:PTHR11353	PANTHER:PTHR11353:SF179	SUPFAM:SSF48592	SUPFAM:SSF52029
SUPFAM:SSF54849	InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02348	EnsemblPlantsGene:TraesCS5B01G563900	EnsemblPlants:TraesCS5B01G563900.2	TIGR:cd03344
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr5B:-:709426415..709429855

Molecular Weight (calculated)

61763.2 Da

IEP (calculated)

5.034

GRAVY (calculated)

-0.016

Length

588 amino acids

Sequence
(BLAST)

001: MATIPTTGSA SLLRGSAALQ RDGRSTRPSA AARPLPGRRA RSVSVVRASA KDIAFDQASR SALQAGVEKL AAAVGVTLGP RGRNVVLDEF GSPKVVNDGV
101: TIARAIELAD PMENAGAALI REVASKTNDS AGDGTTTASV LAREIIKLGL LSVTSGANPV SIKKGIDKTV QSLVEELEKK SRPVKGSGDI KAIAAISAGN
201: DDFIGTMIVE AINKVGPDGV LSIESSSSFE TTVEVEEGME IDRGYISPQF VTNSEKSVVE FENARVLVTD QKISSIKEIL PLLEQTTQLR APLLIIAEDV
301: SGEALATLVV NKLRGILNVA AIKAPGFGER RKALLQDIAI VTGAEFQAKD LGQLIEQTTV EQLGIARKVT ISGSSTTIIA DVATKDEIQA RIAQLKRELS
401: QTDSTYDSEK LAERIAKLSG GVAVIKVGAA TETELEDRKL RIEDAKNATF AAIEEGIVPG GGAAYVHLST FVPAIKEKLD DPEERLGADI IQKALVAPAS
501: LIAHNAGVEG EVIVEKIKDS EWEFGYNAMT DKHENLVEAG VIDPAKVTRC ALQNAASVAG MVLTTQAIVV EKPSKKAPAP AGMPQGMM

Best Arabidopsis Sequence Match ( AT2G28000.1 )
(BLAST)

001: MASANALSSA SVLCSSRQSK LGGGNQQQGQ RVSYNKRTIR RFSVRANVKE IAFDQHSRAA LQAGIDKLAD CVGLTLGPRG RNVVLDEFGS PKVVNDGVTI
101: ARAIELPNAM ENAGAALIRE VASKTNDSAG DGTTTASILA REIIKHGLLS VTSGANPVSL KRGIDKTVQG LIEELQKKAR PVKGRDDIRA VASISAGNDD
201: LIGSMIADAI DKVGPDGVLS IESSSSFETT VEVEEGMEID RGYISPQFVT NPEKLLAEFE NARVLITDQK ITAIKDIIPI LEKTTQLRAP LLIIAEDVTG
301: EALATLVVNK LRGVLNVVAV KAPGFGERRK AMLQDIAILT GAEYLAMDMS LLVENATIDQ LGIARKVTIS KDSTTLIADA ASKDELQARI AQLKKELFET
401: DSVYDSEKLA ERIAKLSGGV AVIKVGAATE TELEDRKLRI EDAKNATFAA IEEGIVPGGG AALVHLSTVI PAIKETFEDA DERLGADIVQ KALLSPAALI
501: AQNAGVEGEV VVEKIMFSDW ENGYNAMTDT YENLFEAGVI DPAKVTRCAL QNAASVAGMV LTTQAIVVDK PKPKAPAAAA PEGLMV

Arabidopsis Description

CPN60A1SLP [Source:UniProtKB/TrEMBL;Acc:A0A178VZW6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.