CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY68896	Canola	cytosol	53.7	99.11
CDX83280	Canola	plastid	92.12	98.45
CDY30514	Canola	plastid	92.28	98.12
CDY31190	Canola	plastid	92.28	97.95
CDY04527	Canola	plastid	91.16	95.13
AT2G28000.1	Thale cress	plastid	87.14	92.49
CDX71396	Canola	plastid	78.14	91.87
KRH25068	Soybean	nucleus	81.51	86.82
Solyc11g069790.1.1	Tomato	plastid	79.42	84.01
VIT_06s0061g00270.t01	Wine grape	plastid	79.1	83.96
PGSC0003DMT400002933	Potato	cytosol, extracellular, plastid	78.3	82.82
Os12t0277500-01	Rice	plastid	76.53	82.35
EES19317	Sorghum	plastid	76.37	82.32
GSMUA_Achr11P...	Banana	plastid	77.33	82.08
GSMUA_AchrUn_...	Banana	plastid	75.88	81.8
Os03t0859600-01	Rice	plastid	41.0	81.73
Zm00001d000399_P001	Maize	plastid	76.53	81.51
TraesCSU01G009200.1	Wheat	mitochondrion, plastid	75.56	81.31
TraesCS2D01G049500.1	Wheat	golgi, plastid	75.56	81.31
EER90466	Sorghum	plastid	74.6	80.0
KRH30612	Soybean	endoplasmic reticulum	76.05	79.76
CDY31193	Canola	plastid	30.39	79.75
TraesCS4A01G315500.2	Wheat	plastid	74.28	78.84
TraesCS5D01G550700.1	Wheat	plastid	74.44	78.74
HORVU5Hr1G125130.1	Barley	plastid	74.28	78.71
Zm00001d034919_P001	Maize	plastid	73.79	78.6
Solyc06g075010.2.1	Tomato	plastid	74.28	78.44
TraesCS5B01G563900.2	Wheat	plastid	74.12	78.4
PGSC0003DMT400031301	Potato	plastid	74.12	78.27
HORVU2Hr1G109400.1	Barley	cytosol	11.58	78.26
HORVU2Hr1G011340.1	Barley	cytosol	20.58	77.58
HORVU2Hr1G007840.7	Barley	mitochondrion, plastid	75.72	75.48
Os03t0859700-00	Rice	extracellular, plastid	21.06	70.81
Zm00001d051252_P001	Maize	cytosol	21.54	65.37
CDY47184	Canola	plastid	55.31	59.52
CDY02601	Canola	plastid	54.66	58.82
CDY11918	Canola	plastid	46.78	48.91
CDY32855	Canola	plastid	46.62	48.82
CDX75715	Canola	cytosol	43.25	47.78
CDY36809	Canola	plastid	46.62	47.78
CDX82537	Canola	plastid	44.86	47.53
CDY08245	Canola	plastid	45.82	47.5
CDX75713	Canola	plastid	45.18	47.39
CDY26100	Canola	plastid	45.82	45.38
CDX72433	Canola	endoplasmic reticulum	22.03	43.35
CDX94835	Canola	mitochondrion	39.55	42.63
CDX93002	Canola	mitochondrion	37.3	42.18
CDY20555	Canola	plastid	41.0	42.01
CDY66193	Canola	plastid	40.84	41.85
CDY19471	Canola	mitochondrion	39.87	41.82
CDY59050	Canola	cytosol	22.51	41.42
CDY72107	Canola	mitochondrion	20.26	41.04
CDY17152	Canola	mitochondrion	37.78	40.94
CDX84697	Canola	mitochondrion	36.82	40.67
CDY02438	Canola	cytosol	45.5	40.6
CDX79518	Canola	cytosol	13.18	40.59
CDX82514	Canola	mitochondrion	37.14	40.38
CDY23605	Canola	cytosol	28.14	40.32
CDX75733	Canola	mitochondrion	36.98	40.21
CDY56074	Canola	plastid	28.14	36.84
CDY59049	Canola	mitochondrion	12.86	36.7
CDY43988	Canola	cytosol	28.94	35.02
CDY10557	Canola	endoplasmic reticulum, plastid	45.34	34.02
CDY66712	Canola	mitochondrion	32.48	33.5
CDY40825	Canola	endoplasmic reticulum, vacuole	11.41	33.33
CDY32775	Canola	cytosol	4.5	32.94
CDY37741	Canola	mitochondrion	30.39	30.93
CDY10302	Canola	extracellular	2.89	27.69
CDX86994	Canola	mitochondrion, plastid	30.39	26.92
CDY56079	Canola	plastid	4.66	21.64
CDX85007	Canola	cytosol, plastid	25.56	15.84

Protein Annotations

MapMan:1.1.8.1.6.2.1	Gene3D:1.10.560.10	MapMan:1.2.1.2.1.1	MapMan:19.1.7.1	Gene3D:3.30.260.10	Gene3D:3.50.7.10
GO:A0A078CK89	EnsemblPlants:CDX77147	ProteinID:CDX77147	ProteinID:CDX77147.1	InterPro:Chaperonin_Cpn60_CS	InterPro:Chaprnin_Cpn60
ncoils:Coil	InterPro:Cpn60/TCP-1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006457	GO:GO:0008150
GO:GO:0009987	GO:GO:0042026	InterPro:GROEL-like_equatorial_sf	EnsemblPlantsGene:GSBRNA2T00127760001	InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409
InterPro:IPR027410	InterPro:IPR027413	HAMAP:MF_00600	PFAM:PF00118	PRINTS:PR00298	ScanProsite:PS00296
PANTHER:PTHR11353	PANTHER:PTHR11353:SF175	SUPFAM:SSF48592	SUPFAM:SSF52029	SUPFAM:SSF54849	InterPro:TCP-1-like_intermed_sf
TIGRFAMs:TIGR02348	UniParc:UPI0004EE495D	SEG:seg	:	:	:

Description

BnaC04g39420D

Coordinates

chrLK031809:+:1479995..1483976

Molecular Weight (calculated)

65909.3 Da

IEP (calculated)

5.116

GRAVY (calculated)

-0.058

Length

622 amino acids

Sequence
(BLAST)

001: MASANVLSSA SVLCSSRQGK LSGGNQQKGQ RVSYRKASSR FSVRANVKEI SFDQSSRAAL QAGIDKLADA VGLTLGPRGR NVVLDEFGSP KVVNDGVTIA
101: RAIELPDAME NAGAALIREV ASKTNDSAGD GTTTASVLAR EIIKHGLLSV TSGANPVSLK RGIDKTVQAL IEELEKRARP VKGGSDIKAV ATISAGNDEL
201: VGTMIADAID KVGPDGVLSI ESSSSFETTV EVEEGMEIDR GYISPQFVTN PEKLLVEFEN ARVLITDQKI TAIKDIIPIL EKTTQLRAPL LIIAEDVTGE
301: ALATLVVNKL RGVLNVVAVK APGFGERRKA MLQDIAILTG AEYQALDMGL LVENTTIDQL GIARKVTISK DSTTLIADAA SKDELQARIS QLKKELSETD
401: SVYDSEKLAE RIAKLAGGVA VIKVGAATET ELEDRKLRIE DAKNATFAAI EEGIVPGGGA TLVHLSTVIP AIKEKLEDAD ERLGADIVQK ALVAPAALIA
501: QNAGIEGEVV VEKIMFSEWE IGYNAMTDTY ENLLEAGVID PAKVTRCALQ NAASVAGMVL TTQAIVVDKP KPKAPTAAPP QGLMVTYGTS SVVTTQHHQG
601: EMLQPRKQER SGHGRMPRQS LL

Best Arabidopsis Sequence Match ( AT2G28000.1 )
(BLAST)

001: MASANALSSA SVLCSSRQSK LGGGNQQQGQ RVSYNKRTIR RFSVRANVKE IAFDQHSRAA LQAGIDKLAD CVGLTLGPRG RNVVLDEFGS PKVVNDGVTI
101: ARAIELPNAM ENAGAALIRE VASKTNDSAG DGTTTASILA REIIKHGLLS VTSGANPVSL KRGIDKTVQG LIEELQKKAR PVKGRDDIRA VASISAGNDD
201: LIGSMIADAI DKVGPDGVLS IESSSSFETT VEVEEGMEID RGYISPQFVT NPEKLLAEFE NARVLITDQK ITAIKDIIPI LEKTTQLRAP LLIIAEDVTG
301: EALATLVVNK LRGVLNVVAV KAPGFGERRK AMLQDIAILT GAEYLAMDMS LLVENATIDQ LGIARKVTIS KDSTTLIADA ASKDELQARI AQLKKELFET
401: DSVYDSEKLA ERIAKLSGGV AVIKVGAATE TELEDRKLRI EDAKNATFAA IEEGIVPGGG AALVHLSTVI PAIKETFEDA DERLGADIVQ KALLSPAALI
501: AQNAGVEGEV VVEKIMFSDW ENGYNAMTDT YENLFEAGVI DPAKVTRCAL QNAASVAGMV LTTQAIVVDK PKPKAPAAAA PEGLMV

Arabidopsis Description

CPN60A1SLP [Source:UniProtKB/TrEMBL;Acc:A0A178VZW6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.