CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX82537	Canola	plastid	92.54	88.76
CDX75713	Canola	plastid	92.18	87.52
AT3G13470.1	Thale cress	plastid	91.12	86.07
TraesCS6B01G012000.1	Wheat	cytosol	61.81	84.67
HORVU7Hr1G006490.2	Barley	cytosol	82.95	84.3
Zm00001d035937_P001	Maize	plastid	85.79	83.42
EER89076	Sorghum	plastid	85.44	83.07
CDY08245	Canola	plastid	88.45	83.0
KRH13605	Soybean	nucleus	86.68	82.57
KRH43861	Soybean	plastid	86.5	82.26
HORVU4Hr1G076680.1	Barley	cytosol	28.77	81.82
Solyc01g028810.2.1	Tomato	plastid	87.03	81.8
PGSC0003DMT400061700	Potato	extracellular	86.86	81.64
HORVU5Hr1G074160.1	Barley	cytosol	28.06	81.03
Os06t0114000-02	Rice	plastid	85.97	80.53
Zm00001d045544_P002	Maize	plastid	85.79	80.5
HORVU2Hr1G107410.2	Barley	cytosol	28.42	80.0
CDY32855	Canola	plastid	84.37	79.97
GSMUA_Achr3P27620_001	Banana	plastid	86.86	79.9
Zm00001d016540_P001	Maize	cytosol	14.74	79.81
TraesCS4A01G452700.2	Wheat	plastid	82.77	79.79
GSMUA_Achr9P23240_001	Banana	plastid	86.5	79.58
CDY26100	Canola	plastid	88.45	79.3
CDY11918	Canola	plastid	83.13	78.66
Os02t0102900-01	Rice	plastid	82.77	77.93
TraesCS6A01G006400.1	Wheat	golgi	82.59	77.76
TraesCS6D01G009100.1	Wheat	golgi	82.59	77.76
CDY36809	Canola	plastid	83.48	77.43
TraesCS6B01G012100.3	Wheat	plastid	82.24	77.17
TraesCS7A01G036200.2	Wheat	golgi	84.9	77.1
TraesCS6B01G011800.1	Wheat	plastid	81.17	77.07
KXG29249	Sorghum	plastid	82.24	76.66
TraesCS7D01G032800.1	Wheat	cytosol	84.9	75.99
Zm00001d053279_P001	Maize	mitochondrion	20.78	74.52
Zm00001d054089_P002	Maize	plastid	81.35	74.23
CDY32775	Canola	cytosol	11.19	74.12
CDX72433	Canola	endoplasmic reticulum	41.56	74.05
Zm00001d046709_P001	Maize	mitochondrion	20.43	73.25
CDY02438	Canola	cytosol	88.63	71.59
TraesCS6B01G039300.2	Wheat	plastid	75.31	70.9
TraesCS6A01G028100.1	Wheat	plastid	75.13	70.74
HORVU6Hr1G005220.3	Barley	plastid	74.96	70.57
TraesCS6D01G031400.1	Wheat	plastid	74.96	70.57
GSMUA_Achr11P...	Banana	plastid	85.97	69.54
CDY23605	Canola	cytosol	53.29	69.12
HORVU4Hr1G066820.2	Barley	cytosol	28.42	68.09
Zm00001d037526_P001	Maize	plastid	21.31	67.8
HORVU6Hr1G000180.2	Barley	plastid	76.91	66.51
CDY10557	Canola	endoplasmic reticulum, plastid	88.81	60.31
CDY20555	Canola	plastid	64.48	59.8
CDY43988	Canola	cytosol	54.35	59.53
CDY66193	Canola	plastid	63.94	59.31
CDY56074	Canola	plastid	49.38	58.53
CDY10302	Canola	extracellular	6.39	55.38
CDX86994	Canola	mitochondrion, plastid	66.07	52.99
CDY68896	Canola	cytosol	28.95	48.37
CDX83280	Canola	plastid	47.96	46.39
CDY30514	Canola	plastid	47.96	46.15
CDY31190	Canola	plastid	47.78	45.9
CDX79518	Canola	cytosol	16.34	45.54
CDY04527	Canola	plastid	47.96	45.3
CDX71396	Canola	plastid	41.03	43.67
CDY59050	Canola	cytosol	26.11	43.49
CDX77147	Canola	plastid	47.78	43.25
CDY47184	Canola	plastid	44.05	42.91
CDY02601	Canola	plastid	43.87	42.73
CDX94835	Canola	mitochondrion	43.16	42.11
CDX93002	Canola	mitochondrion	40.5	41.45
CDX84697	Canola	mitochondrion	41.21	41.21
CDX82514	Canola	mitochondrion	41.56	40.91
CDX75733	Canola	mitochondrion	41.39	40.73
CDY17152	Canola	mitochondrion	41.03	40.24
CDY19471	Canola	mitochondrion	42.1	39.97
CDY40825	Canola	endoplasmic reticulum, vacuole	15.1	39.91
CDY72107	Canola	mitochondrion	21.31	39.09
CDY31193	Canola	plastid	15.81	37.55
CDY66712	Canola	mitochondrion	35.88	33.5
CDY37741	Canola	mitochondrion	34.28	31.59
CDY59049	Canola	mitochondrion	12.08	31.19
CDX85007	Canola	cytosol, plastid	46.71	26.2
CDY56079	Canola	plastid	5.15	21.64
Os02t0103100-01	Rice	plasma membrane, vacuole	0.18	0.68

Protein Annotations

MapMan:1.1.8.1.6.2.2	Gene3D:1.10.560.10	MapMan:1.2.1.2.1.2	MapMan:19.1.7.1	Gene3D:3.30.260.10	Gene3D:3.50.7.10
GO:A0A078CFS8	EnsemblPlants:CDX75715	ProteinID:CDX75715	ProteinID:CDX75715.1	InterPro:Chaprnin_Cpn60	ncoils:Coil
InterPro:Cpn60/TCP-1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0009987	GO:GO:0042026
InterPro:GROEL-like_equatorial_sf	EnsemblPlantsGene:GSBRNA2T00123628001	InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409	InterPro:IPR027410	InterPro:IPR027413
PFAM:PF00118	PRINTS:PR00298	PANTHER:PTHR11353	PANTHER:PTHR11353:SF164	SUPFAM:SSF48592	SUPFAM:SSF52029
SUPFAM:SSF54849	InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02348	UniParc:UPI0004EE5C6E	SEG:seg	:

Description

BnaC03g37980D

Coordinates

chrLK031805:+:108745..111871

Molecular Weight (calculated)

60155.4 Da

IEP (calculated)

4.902

GRAVY (calculated)

-0.104

Length

563 amino acids

Sequence
(BLAST)

001: MISEKNITAA RGGRGRDFNK DGSTIKKLQT GVNKLADLVG FTLGPKGRNV VLESKYGSPK IVNDGVTVAR EVELEDPVEN IGAKLVRQAA AKTNDLAGDG
101: TTTSVVLAQG FIAEGVKSEG ANPVLITRGI EKTAKALVHE LKLMSKEVED SELADVAAVS AGNNPEEGIF GNMIAEAMSK VGRKCVVTLE EGKSAENYLY
201: VVEGMQFDRG YISPYFVTDS EKMSVEYENC KLLLVDKKVT NARDLVGVLE YAIRGGYPIL IIAEDIEQEA LATLVVNKLR GTLKIAALKE PGFGERKSQY
301: LDDIAILTGA TVIREEVGLS LDKAGKEVLG TASKVVLTKE MTTIVGDGST QEAVNKRVVQ IKNLIEQAEQ EYEKEKLNER IAKLSGGVAV IQVGAQTETE
401: LKEKKLRVED ALNATKAAVA EGIVVGVGCT LLRLAAKVDA IKDTLENDEE KVGAEIVKIA LSYPLKLIAK NAGVNGSVVS EKVTDLTLNL HSSNDNVKFG
501: YNAATGKYED LTAAGIIDPT KVVRCCLEHA ASVAKTFLMS DCVVVEIKEP EPVPAGNPMD NSG

Best Arabidopsis Sequence Match ( AT1G55490.1 )
(BLAST)

001: MASTFTATSS IGSMVAPNGH KSDKKLISKL SSSSFGRRQS VCPRPRRSSS AIVCAAKELH FNKDGTTIRR LQAGVNKLAD LVGVTLGPKG RNVVLESKYG
101: SPRIVNDGVT VAREVELEDP VENIGAKLVR QAAAKTNDLA GDGTTTSVVL AQGFIAEGVK VVAAGANPVL ITRGIEKTAK ALVTELKKMS KEVEDSELAD
201: VAAVSAGNND EIGNMIAEAM SKVGRKGVVT LEEGKSAENN LYVVEGMQFD RGYISPYFVT DSEKMSVEFD NCKLLLVDKK ITNARDLVGV LEDAIRGGYP
301: ILIIAEDIEQ EALATLVVNK LRGTLKIAAL RAPGFGERKS QYLDDIAILT GATVIREEVG LSLDKAGKEV LGNASKVVLT KETSTIVGDG STQDAVKKRV
401: TQIKNLIEQA EQDYEKEKLN ERIAKLSGGV AVIQVGAQTE TELKEKKLRV EDALNATKAA VEEGIVVGGG CTLLRLASKV DAIKATLDND EEKVGADIVK
501: RALSYPLKLI AKNAGVNGSV VSEKVLSNDN VKFGYNAATG KYEDLMAAGI IDPTKVVRCC LEHAASVAKT FLMSDCVVVE IKEPEPVPVG NPMDNSGYGY

Arabidopsis Description

CPN60B1LEN1 [Source:UniProtKB/TrEMBL;Acc:A0A178W724]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.