Factsheet for HORVU6Hr1G000180.2

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

mitochondrion 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
TargetP:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G006400.1	Wheat	golgi	81.87	89.13
TraesCS6B01G012000.1	Wheat	cytosol	56.22	89.05
TraesCS6B01G011800.1	Wheat	plastid	80.8	88.7
TraesCS6B01G012100.3	Wheat	plastid	81.11	88.0
Os02t0102900-01	Rice	plastid	77.42	84.28
KXG29249	Sorghum	plastid	77.57	83.61
Zm00001d054089_P002	Maize	plastid	76.65	80.88
HORVU6Hr1G005220.3	Barley	plastid	73.73	80.27
GSMUA_Achr9P23240_001	Banana	plastid	73.27	77.94
HORVU7Hr1G006490.2	Barley	cytosol	66.21	77.8
GSMUA_Achr3P27620_001	Banana	plastid	72.81	77.45
CDX82537	Canola	plastid	69.59	77.17
Bra001507.1-P	Field mustard	plastid	69.89	77.12
AT3G13470.1	Thale cress	plastid	70.51	77.01
CDX75715	Canola	cytosol	66.51	76.91
HORVU4Hr1G076680.1	Barley	cytosol	23.35	76.77
VIT_06s0004g00240.t01	Wine grape	plastid	71.58	76.64
CDX75713	Canola	plastid	69.74	76.56
KRH43861	Soybean	plastid	69.43	76.35
KRH13605	Soybean	nucleus	69.12	76.14
AT1G55490.3	Thale cress	plastid	70.05	76.0
CDY32855	Canola	plastid	69.28	75.93
AT5G56500.2	Thale cress	plastid	69.59	75.88
Solyc01g028810.2.1	Tomato	plastid	69.59	75.63
PGSC0003DMT400061700	Potato	extracellular	69.59	75.63
VIT_09s0002g03930.t01	Wine grape	plastid	70.51	75.37
Bra028922.1-P	Field mustard	plastid	68.36	75.3
CDY08245	Canola	plastid	69.28	75.17
CDY11918	Canola	plastid	68.36	74.79
Bra011919.1-P	Field mustard	plastid	69.59	74.51
HORVU2Hr1G107410.2	Barley	cytosol	22.89	74.5
HORVU5Hr1G074160.1	Barley	cytosol	22.27	74.36
CDY36809	Canola	plastid	68.2	73.15
CDY26100	Canola	plastid	69.43	71.97
Solyc03g120850.2.1	Tomato	plastid	66.36	71.41
PGSC0003DMT400006501	Potato	plastid	66.05	71.07
CDX72433	Canola	endoplasmic reticulum	32.72	67.41
Bra030858.1-P	Field mustard	cytosol	70.81	66.91
CDY02438	Canola	cytosol	70.05	65.42
CDY23605	Canola	cytosol	41.78	62.67
HORVU4Hr1G066820.2	Barley	cytosol	22.58	62.55
CDY56074	Canola	plastid	42.7	58.53
CDY10557	Canola	endoplasmic reticulum, plastid	70.97	55.73
HORVU2Hr1G077410.18	Barley	plastid	49.77	54.55
CDY43988	Canola	cytosol	41.63	52.72
Bra027431.1-P	Field mustard	cytosol	41.78	52.41
HORVU5Hr1G125130.1	Barley	plastid	41.63	46.17
HORVU2Hr1G007840.7	Barley	mitochondrion, plastid	40.86	42.63
CDX86994	Canola	mitochondrion, plastid	45.93	42.59
HORVU1Hr1G079910.1	Barley	mitochondrion, plasma membrane	37.94	42.51
CDY40825	Canola	endoplasmic reticulum, vacuole	13.21	40.38
HORVU4Hr1G078820.3	Barley	plastid	38.25	39.46
HORVU2Hr1G011340.1	Barley	cytosol	9.68	38.18
HORVU0Hr1G038830.17	Barley	plastid	34.41	37.97
HORVU1Hr1G038680.8	Barley	mitochondrion	38.71	37.67
CDY32775	Canola	cytosol	4.3	32.94
HORVU2Hr1G109400.1	Barley	cytosol	4.61	32.61
CDX85007	Canola	cytosol, plastid	34.87	22.61
HORVU4Hr1G071510.2	Barley	cytosol	24.42	22.33
CDY10302	Canola	extracellular	1.08	10.77
Os02t0103100-01	Rice	plasma membrane, vacuole	0.61	2.74

Protein Annotations

MapMan:1.1.8.1.6.2.2	Gene3D:1.10.560.10	MapMan:1.2.1.2.1.2	MapMan:19.1.7.1	Gene3D:3.30.260.10	Gene3D:3.50.7.10
UniProt:A0A287T3H0	InterPro:Chaperonin_Cpn60_CS	InterPro:Chaprnin_Cpn60	ncoils:Coil	InterPro:Cpn60/TCP-1	GO:GO:0000166
GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006457	GO:GO:0008150	GO:GO:0009987	GO:GO:0042026	InterPro:GROEL-like_equatorial_sf
InterPro:GroEL-like_apical_dom_sf	EnsemblPlantsGene:HORVU6Hr1G000180	EnsemblPlants:HORVU6Hr1G000180.2	InterPro:IPR027409	InterPro:IPR027410	InterPro:IPR027413
PFAM:PF00118	PRINTS:PR00298	ScanProsite:PS00296	PANTHER:PTHR11353	PANTHER:PTHR11353:SF102	SUPFAM:SSF48592
SUPFAM:SSF52029	SUPFAM:SSF54849	InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02348	UniParc:UPI000B475003	SEG:seg

Description

No Description!

Coordinates

chrchr6H:+:481564..486583

Molecular Weight (calculated)

69765.9 Da

IEP (calculated)

8.575

GRAVY (calculated)

-0.251

Length

651 amino acids

Sequence
(BLAST)

001: LPTHHAKRSP RKEGSRRHHR PTCLPSSLVP PPLSYFYTSP KAEERSDGKP PLNPSRRPPA VLLFRARSLT HSDSVNTHTM ASPLGGASTC GINAAVPTGF
101: AAKKQLSLVS PPSVSLPQRI RPGRKCSFRA NAAKELYFNK DGSAIKKLQT GVNKLADLVG VTLGPKGRNV VLESKYGSPR IVNDGVTVAK EVELEDPVEN
201: IGAKLVRQAA AKTNDLAGDG TTTSVILAQG MIAEGVKIVA AGANPVQIAR GIEKTTKALV GELRKMSKEV EDSELADVAA VSAGNNYEIG NMIADAMSKV
301: GRQGVVTLEE GKSAENNLYV VEGMQFDRGY ISPYFVTDSE KMSVEYENCK LLLVDKKINN ARDLITLLED AIKGGYPILI VAEDIEQEAL ATLVVNRLRG
401: ALKIAAIKAP GFGERKSQYL DDIATLTGGT VIREEIGLSL DKADKEVLGN AAKVVITKDS TTIVGDGTTQ EEVTKRVTQI RNQIEASEQE YEKEKLNERI
501: AKLSGGVAVI QVGAQTETEL KEKKLRVEDA LNATKAAVEE GIVVGGGCTL LRLASKVDAI KETLENDEQK VGAEIVRKSL SYPLKLIAKN AGVNGSVVTE
601: KVLVNDNFRY GYNAATGKYE DLMAAGIIDP TKGCEVLLGA CRIGGQDIHH L

Best Arabidopsis Sequence Match ( AT1G55490.1 )
(BLAST)

001: MASTFTATSS IGSMVAPNGH KSDKKLISKL SSSSFGRRQS VCPRPRRSSS AIVCAAKELH FNKDGTTIRR LQAGVNKLAD LVGVTLGPKG RNVVLESKYG
101: SPRIVNDGVT VAREVELEDP VENIGAKLVR QAAAKTNDLA GDGTTTSVVL AQGFIAEGVK VVAAGANPVL ITRGIEKTAK ALVTELKKMS KEVEDSELAD
201: VAAVSAGNND EIGNMIAEAM SKVGRKGVVT LEEGKSAENN LYVVEGMQFD RGYISPYFVT DSEKMSVEFD NCKLLLVDKK ITNARDLVGV LEDAIRGGYP
301: ILIIAEDIEQ EALATLVVNK LRGTLKIAAL RAPGFGERKS QYLDDIAILT GATVIREEVG LSLDKAGKEV LGNASKVVLT KETSTIVGDG STQDAVKKRV
401: TQIKNLIEQA EQDYEKEKLN ERIAKLSGGV AVIQVGAQTE TELKEKKLRV EDALNATKAA VEEGIVVGGG CTLLRLASKV DAIKATLDND EEKVGADIVK
501: RALSYPLKLI AKNAGVNGSV VSEKVLSNDN VKFGYNAATG KYEDLMAAGI IDPTKVVRCC LEHAASVAKT FLMSDCVVVE IKEPEPVPVG NPMDNSGYGY

Arabidopsis Description

CPN60B1LEN1 [Source:UniProtKB/TrEMBL;Acc:A0A178W724]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.