Factsheet for Os02t0102900-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 1
plastid 9

Predictors

GFP

MS/MS

Papers

plastid: 17189339
plastid: 21433289
extracellular: 26072143
plasma membrane: 27800704
plastid: 27992503

msms PMID: 26072143 doi

B Du, Z Wei, Z Wang, X Wang, X Peng, B Du, R Chen, L Zhu, G He

State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan, 430072, China., State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan, 430072, China. Electronic address: gche@whu.edu.cn.

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

msms PMID: 21433289 doi

S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky

Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.

msms PMID: 17189339 doi

T Kleffmann, A von Zychlinski, D Russenberger, M Hirsch-Hoffmann, P Gehrig, W Gruissem, S Baginsky

Institute of Plant Sciences, Eidgenössische Technische Hochschule Zurich, 8092 Zurich, Switzerland.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G012000.1	Wheat	cytosol	64.88	94.4
KXG29249	Sorghum	plastid	94.31	93.38
HORVU4Hr1G076680.1	Barley	cytosol	30.6	92.42
TraesCS6D01G009100.1	Wheat	golgi	91.3	91.3
TraesCS6A01G006400.1	Wheat	golgi	91.3	91.3
HORVU5Hr1G074160.1	Barley	cytosol	29.77	91.28
HORVU2Hr1G107410.2	Barley	cytosol	30.27	90.5
TraesCS6B01G011800.1	Wheat	plastid	89.3	90.05
TraesCS6B01G012100.3	Wheat	plastid	90.3	90.0
Zm00001d054089_P002	Maize	plastid	92.81	89.95
Os06t0114000-02	Rice	plastid	84.11	83.69
GSMUA_Achr9P23240_001	Banana	plastid	85.45	83.5
CDX82537	Canola	plastid	81.77	83.3
Bra001507.1-P	Field mustard	plastid	82.11	83.22
GSMUA_Achr3P27620_001	Banana	plastid	84.78	82.84
TraesCS6A01G028100.1	Wheat	plastid	82.78	82.78
CDX75715	Canola	cytosol	77.93	82.77
TraesCS6D01G031400.1	Wheat	plastid	82.61	82.61
TraesCS6B01G039300.2	Wheat	plastid	82.61	82.61
KRH43861	Soybean	plastid	81.61	82.43
HORVU6Hr1G005220.3	Barley	plastid	82.27	82.27
KRH13605	Soybean	nucleus	81.27	82.23
AT3G13470.1	Thale cress	plastid	81.94	82.21
CDX75713	Canola	plastid	81.44	82.12
Bra028922.1-P	Field mustard	plastid	80.43	81.39
AT1G55490.3	Thale cress	plastid	81.61	81.33
CDY32855	Canola	plastid	80.77	81.31
AT5G56500.2	Thale cress	plastid	80.94	81.07
CDY08245	Canola	plastid	81.27	81.0
PGSC0003DMT400061700	Potato	extracellular	81.1	80.97
Solyc01g028810.2.1	Tomato	plastid	81.1	80.97
VIT_06s0004g00240.t01	Wine grape	plastid	82.11	80.76
CDY11918	Canola	plastid	80.27	80.67
VIT_09s0002g03930.t01	Wine grape	plastid	81.94	80.46
Bra011919.1-P	Field mustard	plastid	81.27	79.93
CDY36809	Canola	plastid	80.27	79.08
HORVU6Hr1G000180.2	Barley	plastid	84.28	77.42
CDY26100	Canola	plastid	81.27	77.39
Solyc03g120850.2.1	Tomato	plastid	78.09	77.19
PGSC0003DMT400006501	Potato	plastid	77.76	76.86
HORVU4Hr1G066820.2	Barley	cytosol	29.26	74.47
CDX72433	Canola	endoplasmic reticulum	37.46	70.89
Bra030858.1-P	Field mustard	cytosol	81.27	70.54
CDY02438	Canola	cytosol	81.1	69.58
CDY32775	Canola	cytosol	9.53	67.06
CDY23605	Canola	cytosol	47.66	65.67
Os04t0443900-01	Rice	plastid	58.86	59.86
CDY56074	Canola	plastid	46.82	58.95
CDY10557	Canola	endoplasmic reticulum, plastid	80.94	58.38
CDY43988	Canola	cytosol	48.33	56.23
Bra027431.1-P	Field mustard	cytosol	48.49	55.88
CDY10302	Canola	extracellular	5.35	49.23
Os12t0277500-01	Rice	plastid	47.49	49.13
Os03t0859600-01	Rice	plastid	25.59	49.04
Os10t0462900-01	Rice	mitochondrion	45.48	47.39
CDX86994	Canola	mitochondrion, plastid	54.85	46.72
Os03t0859700-00	Rice	extracellular, plastid	14.21	45.95
Os03t0143400-01	Rice	mitochondrion	43.98	45.58
Os05t0540300-01	Rice	mitochondrion	43.14	44.41
CDY40825	Canola	endoplasmic reticulum, vacuole	15.05	42.25
Os09t0563300-02	Rice	plastid	37.79	38.7
CDX85007	Canola	cytosol, plastid	42.64	25.4
Os02t0103100-01	Rice	plasma membrane, vacuole	0.5	2.05

Protein Annotations

MapMan:1.1.8.1.6.2.2	Gene3D:1.10.560.10	MapMan:1.2.1.2.1.2	MapMan:19.1.7.1	Gene3D:3.30.260.10	Gene3D:3.50.7.10
EntrezGene:4327993	ProteinID:BAD07821.1	ProteinID:BAF07515.1	ProteinID:BAS76532.1	InterPro:Chaperonin_Cpn60_CS	InterPro:Chaprnin_Cpn60
ncoils:Coil	InterPro:Cpn60/TCP-1	ProteinID:EEE56131.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	GO:GO:0005829	GO:GO:0006457	GO:GO:0006458	GO:GO:0007005	GO:GO:0008150
GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0016043	GO:GO:0042026	GO:GO:0044183
GO:GO:0051082	GO:GO:0061077	InterPro:GROEL-like_equatorial_sf	EMBL:GU120333	InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409
InterPro:IPR027410	InterPro:IPR027413	HAMAP:MF_00600	EnsemblPlantsGene:Os02g0102900	EnsemblPlants:Os02t0102900-01	PFAM:PF00118
PRINTS:PR00298	ScanProsite:PS00296	PANTHER:PTHR11353	PANTHER:PTHR11353:SF102	UniProt:Q6ZFJ9	SUPFAM:SSF48592
SUPFAM:SSF52029	SUPFAM:SSF54849	InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02348	UniParc:UPI0000236804	RefSeq:XP_015626534.1
SEG:seg	:	:	:	:	:

Description

chaperonin 60 beta subunit 2, chaperonin 62.5K beta-chainSimilar to RuBisCO subunit binding-protein beta subunit, chloroplast (60 kDa chaperonin beta subunit) (CPN-60 beta) (Fragment). (Os02t0102900-01)

Coordinates

chr2:+:158662..163728

Molecular Weight (calculated)

63801.8 Da

IEP (calculated)

5.580

GRAVY (calculated)

-0.121

Length

598 amino acids

Sequence
(BLAST)

001: MASAFGSTSA CGIKITPTAF ATKKHLCLVP PPVVSLPRKN RPQRKCNFRV NAAKELYFNK DGLAIKKLQN GVNKLADLVG VTLGPKGRNV VLESKYGSPK
101: IVNDGVTVAK EVELEDPVEN IGAKLVRQAA AKTNDLAGDG TTTSVVLAQG MITEGVKVVA AGANPVQITR GIEKTAKALV SELQKMSKEV EDSELADVAA
201: VSAGNNYEIG NMIAEAMNKV GRQGVVTLEE GKSAENNLYV VEGMQFDRGY ISPYFVTDSE KMSVEYENCK LLLVDKKINN ARDLITILED AIRGGYPILI
301: VTEDIEQEAL ATLVVNRLRG ALKIAAIKAP GFGERKSQYL DDIATLTGGT VIREEVGLSL DKADRDVLGT AAKVVVTKDS TTIVGDGTTQ DEVNKRVTQI
401: KNQIEVAEQE YEKEKLNERI AKLSGGVAVI QVGAQTETEL KEKKLRVEDA LNATKAAVEE GIVVGGGCTL LRLASKVDAI IETLENDEQK VGAEIVRKSL
501: SYPLKLIAKN AGVNGSVVTE KVLANDNFRY GYNAATGKYE DLMAAGIIDP TKVVRCCLEH AASVAKTFIT SDAVVVDIKE PEKAAAAGNP MGGSGFGF

Best Arabidopsis Sequence Match ( AT3G13470.1 )
(BLAST)

001: MASTFTATSS LGSLLAPNAI KLSSATSISS SSFGRRHNVC VRRSRPAIVC AAKELHFNKD GTTIRKLQTG VNKLADLVGV TLGPKGRNVV LESKYGSPRI
101: VNDGVTVARE VELEDPVENI GAKLVRQAAA KTNDLAGDGT TTSVVLAQGF IAEGVKVVAA GANPVLITRG IEKTAKALVN ELKLMSKEVE DSELADVAAV
201: SAGNNHEVGS MIAEAMSKVG RKGVVTLEEG KSAENNLYVV EGMQFDRGYI SPYFVTDSEK MSVEYDNCKL LLVDKKVTNA RDLVGVLEDA IRGGYPILII
301: AEDIEQEALA TLVVNKLRGT LKIAALKAPG FGERKSQYLD DIAILTGATV IREEVGLSLD KAGKEVLGNA SKVVLTKEMT TIVGDGTTQE AVNKRVVQIR
401: NLIEQAEQDY EKEKLNERIA KLSGGVAVIQ VGAQTETELK EKKLRVEDAL NATKAAVEEG IVVGGGCTLL RLASKVDAIK DTLENDEEKV GAEIVKRALS
501: YPLKLIAKNA GVNGSVVSEK VLANDNVKFG YNAATGKYED LMAAGIIDPT KVVRCCLEHA ASVAKTFLMS DCVVVEIPEP EPVPAGNPMD NSGYGY

Arabidopsis Description

CPN60B2Chaperonin 60 subunit beta 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LJE4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.