Factsheet for Os03t0143400-01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

cytosol 1
mitochondrion 9

Predictors

GFP

MS/MS

Papers

mitochondrion: 16429260
mitochondrion: 19010998
mitochondrion: 23027867
extracellular: 24083427
golgi: 25047511
plasma membrane: 27800704
plastid: 27992503

msms PMID: 23027867 doi

G Liu, H Tian, YQ Huang, J Hu, YX Ji, SQ Li, YQ Feng, L Guo, YG Zhu

State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan 430072, China.

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 16429260 doi

KA Howell, AH Millar, J Whelan

ARC Centre of Excellence in Plant Energy Biology, CMS Building M310, University of Western Australia, 35 Stirling Hwy, Perth, WA 6009, Australia.

msms PMID: 19010998 doi

S Huang, NL Taylor, R Narsai, H Eubel, J Whelan, AH Millar

Australian Research Council Centre of Excellence in Plant Energy Biology, M316, University of Western Australia, Crawley, 6009 Western Australia, Australia.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

msms PMID: 24083427 doi

T Shinano, T Yoshimura, T Watanabe, Y Unno, M Osaki, Y Nanjo, S Komatsu

Agricultural Radiation Research Center, NARO Tohoku Agricultural Research Center , 50, Harajyukuminami, Arai, Fukushima 960-2156, Japan.

msms PMID: 25047511 doi

Y Nie, F Huang, S Dong, L Li, P Gao, H Zhao, Y Wang, S Han

Beijing Key Laboratory of Gene Resource and Molecular Development, Beijing Normal University, College of Life Sciences, Beijing, P. R. China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os10t0462900-01	Rice	mitochondrion	94.8	95.3
TraesCS4A01G409100.1	Wheat	mitochondrion	92.03	92.19
TraesCS4B01G307700.1	Wheat	mitochondrion	91.85	92.01
KXG40202	Sorghum	cytosol	63.26	89.68
VIT_05s0051g00340.t01	Wine grape	mitochondrion	87.17	87.48
KRH33513	Soybean	mitochondrion	86.31	86.61
KRG90277	Soybean	mitochondrion	86.14	86.43
GSMUA_Achr1P11160_001	Banana	mitochondrion	86.48	86.33
GSMUA_Achr10P...	Banana	mitochondrion	85.79	86.09
KRH34594	Soybean	mitochondrion	85.96	85.96
KRG92192	Soybean	mitochondrion	85.62	85.91
Solyc05g053470.2.1	Tomato	plastid	85.27	85.86
PGSC0003DMT400069855	Potato	mitochondrion	85.1	85.69
Bra001934.1-P	Field mustard	mitochondrion	85.27	85.27
AT3G23990.1	Thale cress	mitochondrion	85.27	85.27
CDX93002	Canola	mitochondrion	81.11	85.09
CDX94835	Canola	mitochondrion	84.92	84.92
PGSC0003DMT400030265	Potato	mitochondrion	84.06	84.35
HORVU4Hr1G078820.3	Barley	plastid	92.2	84.31
CDX84697	Canola	mitochondrion	81.8	83.84
CDY72107	Canola	mitochondrion	44.54	83.71
CDX79518	Canola	cytosol	29.29	83.66
Bra022931.1-P	Field mustard	mitochondrion	80.59	83.48
Solyc09g091180.2.1	Tomato	extracellular, mitochondrion, nucleus, unclear	83.71	83.42
Bra005514.1-P	Field mustard	mitochondrion	80.07	82.65
AT2G33210.1	Thale cress	mitochondrion	83.71	82.56
CDY17152	Canola	mitochondrion	81.63	82.06
CDY19471	Canola	mitochondrion	83.71	81.45
CDY59050	Canola	cytosol	47.66	81.36
TraesCS4D01G305900.1	Wheat	golgi	91.85	80.55
CDY59049	Canola	mitochondrion	27.04	71.56
Os05t0540300-01	Rice	mitochondrion	68.28	67.81
Bra021836.1-P	Field mustard	cytosol	50.61	65.32
GSMUA_Achr10P...	Banana	cytosol	15.25	63.77
CDY66712	Canola	mitochondrion	64.3	61.53
CDY37741	Canola	mitochondrion	63.43	59.9
TraesCS4B01G266200.1	Wheat	cytosol	42.29	58.8
Os03t0859600-01	Rice	plastid	24.96	46.15
Os02t0102900-01	Rice	plastid	45.58	43.98
Os06t0114000-02	Rice	plastid	44.71	42.93
Os12t0277500-01	Rice	plastid	42.63	42.56
Os04t0443900-01	Rice	plastid	39.86	39.12
Os03t0859700-00	Rice	extracellular, plastid	12.48	38.92
Os09t0563300-02	Rice	plastid	38.99	38.53
HORVU4Hr1G071510.2	Barley	cytosol	45.23	36.66
Os02t0103100-01	Rice	plasma membrane, vacuole	0.35	1.37

Protein Annotations

Gene3D:1.10.560.10	MapMan:19.1.7.1	Gene3D:3.30.260.10	Gene3D:3.50.7.10	EntrezGene:4331590	ProteinID:ABF93929.1
EMBL:AK073999	ProteinID:BAF10852.1	ProteinID:BAS82242.1	InterPro:Chaperonin_Cpn60_CS	InterPro:Chaprnin_Cpn60	ncoils:Coil
InterPro:Cpn60/TCP-1	ProteinID:EEE58306.1	EMBL:FJ940198	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	GO:GO:0005829	GO:GO:0006457	GO:GO:0006458	GO:GO:0006810	GO:GO:0008150
GO:GO:0009987	GO:GO:0016043	GO:GO:0042026	GO:GO:0044183	GO:GO:0045041	GO:GO:0051082
GO:GO:0061077	InterPro:GROEL-like_equatorial_sf	InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409	InterPro:IPR027410	InterPro:IPR027413
HAMAP:MF_00600	EnsemblPlantsGene:Os03g0143400	EnsemblPlants:Os03t0143400-01	PFAM:PF00118	PRINTS:PR00298	ScanProsite:PS00296
PANTHER:PTHR11353	PANTHER:PTHR11353:SF85	UniProt:Q10RW9	SUPFAM:SSF48592	SUPFAM:SSF52029	SUPFAM:SSF54849
InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02348	UniParc:UPI0000DB40E1	RefSeq:XP_015632031.1	SEG:seg	:

Description

heat-shock protein 60Similar to mitochondrial chaperonin-60 [Oryza sativa (japonica cultivar-group)]. (Os03t0143400-01)

Coordinates

chr3:-:2401014..2406713

Molecular Weight (calculated)

61048.9 Da

IEP (calculated)

5.388

GRAVY (calculated)

-0.045

Length

577 amino acids

Sequence
(BLAST)

001: MYRAAASLAS KARQAGSSAR QIGSRLALHR NYAAKDIKFG VEARALMLRG VEELADAVKV TMGPKGRTVV IEQSFGAPKV TKDGVTVAKS IEFSNRVKNV
101: GASLVKQVAN ATNDTAGDGT TCATVLTKAI FAEGCKSVAA GMNAMDLRRG ISMAVDEVVT NLKGMARMIS TSEEIAQVGT ISANGEREIG ELIAKAMEKV
201: GKEGVITITD GNTLYNELEV VEGMKLDRGY ISPYFITNQK NQKCELDDPL ILIHDKKVSN LHAVVKVLEL ALKKQRPLLI VAEDVESEAL GTLIINKLRA
301: GIKVCAVKAP GFGESRKANL QDLAILTGGE VITEELGMNL ENFEPQMLGT CKKVTVSKDD TVILDGAGDK KAIEERAEQL RSAIELSTSD YDKEKLQERL
401: AKLSGGVAVL KIGGASEAEV GEKKDRVTDA LNATKAAVEE GIVPGGGVAL LYASKDLDKL QTANFDQKIG VQIIQNALKT PVHTIASNAG VEGSVIIGKL
501: LEQDNTDLGY DAAKGEYVDM VKSGIIDPLK VIRTALVDAA SVSSLMTTTE SIIVEIPKEE EAAAAAPAMG GMGGMGF

Best Arabidopsis Sequence Match ( AT3G23990.1 )
(BLAST)

001: MYRFASNLAS KARIAQNARQ VSSRMSWSRN YAAKEIKFGV EARALMLKGV EDLADAVKVT MGPKGRNVVI EQSWGAPKVT KDGVTVAKSI EFKDKIKNVG
101: ASLVKQVANA TNDVAGDGTT CATVLTRAIF AEGCKSVAAG MNAMDLRRGI SMAVDAVVTN LKSKARMIST SEEIAQVGTI SANGEREIGE LIAKAMEKVG
201: KEGVITIQDG KTLFNELEVV EGMKLDRGYT SPYFITNQKT QKCELDDPLI LIHEKKISSI NSIVKVLELA LKRQRPLLIV SEDVESDALA TLILNKLRAG
301: IKVCAIKAPG FGENRKANLQ DLAALTGGEV ITDELGMNLE KVDLSMLGTC KKVTVSKDDT VILDGAGDKK GIEERCEQIR SAIELSTSDY DKEKLQERLA
401: KLSGGVAVLK IGGASEAEVG EKKDRVTDAL NATKAAVEEG ILPGGGVALL YAARELEKLP TANFDQKIGV QIIQNALKTP VYTIASNAGV EGAVIVGKLL
501: EQDNPDLGYD AAKGEYVDMV KAGIIDPLKV IRTALVDAAS VSSLLTTTEA VVVDLPKDES ESGAAGAGMG GMGGMDY

Arabidopsis Description

CPN60Chaperonin CPN60, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:P29197]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.