Factsheet for Bra001934.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 9

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX93002	Canola	mitochondrion	95.32	100.0
AT3G23990.1	Thale cress	mitochondrion	95.49	95.49
VIT_05s0051g00340.t01	Wine grape	mitochondrion	89.25	89.57
KRH33513	Soybean	mitochondrion	88.21	88.52
KRG90277	Soybean	mitochondrion	88.04	88.35
KRG92192	Soybean	mitochondrion	87.52	87.83
Os10t0462900-01	Rice	mitochondrion	87.35	87.8
KRH34594	Soybean	mitochondrion	87.69	87.69
GSMUA_Achr10P...	Banana	mitochondrion	86.66	86.96
Zm00001d014090_P002	Maize	mitochondrion	86.66	86.66
EER94121	Sorghum	mitochondrion	86.66	86.66
Zm00001d032789_P001	Maize	plastid	86.14	86.28
TraesCS1A01G145000.1	Wheat	mitochondrion	85.79	86.24
TraesCS1B01G162300.1	Wheat	mitochondrion	85.62	86.06
TraesCS1D01G144000.1	Wheat	mitochondrion	85.62	86.06
GSMUA_Achr1P11160_001	Banana	mitochondrion	85.79	85.64
Os03t0143400-01	Rice	mitochondrion	85.27	85.27
Bra005514.1-P	Field mustard	mitochondrion	82.32	84.97
TraesCS4A01G409100.1	Wheat	mitochondrion	84.4	84.55
Bra022931.1-P	Field mustard	mitochondrion	81.46	84.38
TraesCS4B01G307700.1	Wheat	mitochondrion	84.23	84.38
KXG40202	Sorghum	cytosol	58.58	83.05
HORVU4Hr1G078820.3	Barley	plastid	84.4	77.18
HORVU1Hr1G038680.8	Barley	mitochondrion	86.48	74.59
TraesCS4D01G305900.1	Wheat	golgi	84.23	73.86
Bra001524.1-P	Field mustard	mitochondrion	70.19	70.8
Bra021836.1-P	Field mustard	cytosol	51.99	67.11
GSMUA_Achr10P...	Banana	cytosol	14.9	62.32
TraesCS4B01G266200.1	Wheat	cytosol	40.03	55.66
Bra028922.1-P	Field mustard	plastid	46.27	45.18
Bra001507.1-P	Field mustard	plastid	45.75	44.75
Bra000498.1-P	Field mustard	mitochondrion	40.9	44.11
Bra011919.1-P	Field mustard	plastid	45.06	42.76
Bra011985.1-P	Field mustard	plastid	42.98	42.39
Bra034383.1-P	Field mustard	plastid	42.46	41.88
Bra012462.1-P	Field mustard	plastid	42.29	40.2
Bra030858.1-P	Field mustard	cytosol	45.58	38.17
Bra023694.1-P	Field mustard	plastid	37.26	37.2
HORVU4Hr1G071510.2	Barley	cytosol	42.29	34.27
Bra027431.1-P	Field mustard	cytosol	27.21	30.25

Protein Annotations

Gene3D:1.10.560.10	MapMan:19.1.7.1	Gene3D:3.30.260.10	Gene3D:3.50.7.10	EnsemblPlantsGene:Bra001934	EnsemblPlants:Bra001934.1
EnsemblPlants:Bra001934.1-P	InterPro:Chaperonin_Cpn60_CS	InterPro:Chaprnin_Cpn60	InterPro:Cpn60/TCP-1	GO:GO:0000166	GO:GO:0003674
GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005507	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005759	GO:GO:0005773
GO:GO:0005774	GO:GO:0005829	GO:GO:0005840	GO:GO:0006457	GO:GO:0006950	GO:GO:0008150
GO:GO:0009408	GO:GO:0009628	GO:GO:0009987	GO:GO:0016020	GO:GO:0022626	GO:GO:0042026
GO:GO:0042788	GO:GO:0046686	InterPro:GROEL-like_equatorial_sf	InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409	InterPro:IPR027410
InterPro:IPR027413	UniProt:M4CCK4	HAMAP:MF_00600	PFAM:PF00118	PRINTS:PR00298	ScanProsite:PS00296
PANTHER:PTHR11353	PANTHER:PTHR11353:SF85	SUPFAM:SSF48592	SUPFAM:SSF52029	SUPFAM:SSF54849	InterPro:TCP-1-like_intermed_sf
TIGRFAMs:TIGR02348	UniParc:UPI0001B63BF9	SEG:seg	:	:	:

Description

AT3G23990 (E=5e-301) HSP60, HSP60-3B | HSP60 (HEAT SHOCK PROTEIN 60); ATP binding

Coordinates

chrA03:-:19439537..19442743

Molecular Weight (calculated)

61320.3 Da

IEP (calculated)

5.414

GRAVY (calculated)

-0.048

Length

577 amino acids

Sequence
(BLAST)

001: MFRFVSSLAS KARIASNTRQ VSSRMSWSRN YAAKEIKFGV EARALMLRGV EELADAVRVT MGPKGRTVVI EQSWGAPKVT KDGVTVAKSI EFKDKVKNVG
101: ASLVKQVANA TNDVAGDGTT CATVLTRAIF TEGCKSVAAG MNAMDLRRGI SMAVDAVVTN LKSRARMIST SEEIAQVGTI SANGEREIGE LIAKAMEKVG
201: KEGVITIQDG KTLINELEVV EGMKLDRGYT SPYFITNQKT QKCELEEPLI LIHEKKISSI NSIVKVLELA MKKQRPLLIV SEDVESEALA TLILNKLRAG
301: IKVCAIKAPG FGENRKANLQ DLAALTGGEV ITDELGMNLE KVDLGMLGTC KRVTVSKDDT VILDGAGDKT AIEERCEQIR SAIELSTSDY DKEKLQERLA
401: KLSGGVAVLK IGGASEAEVG EKKDRVTDAL NATKAAVEEG ILPGGGVALL YAARELEKLP TANFDQKIGV QIIQNALKTP VHTIASNAGV EGAVIVGKLL
501: EQDNTDLGYD AAKGEYVDMV KAGIIDPLKV IRTALVDAAS VSSLLTTTEA VVVDLPKDES ESAGAGAGMG GMGGMDY

Best Arabidopsis Sequence Match ( AT3G23990.1 )
(BLAST)

001: MYRFASNLAS KARIAQNARQ VSSRMSWSRN YAAKEIKFGV EARALMLKGV EDLADAVKVT MGPKGRNVVI EQSWGAPKVT KDGVTVAKSI EFKDKIKNVG
101: ASLVKQVANA TNDVAGDGTT CATVLTRAIF AEGCKSVAAG MNAMDLRRGI SMAVDAVVTN LKSKARMIST SEEIAQVGTI SANGEREIGE LIAKAMEKVG
201: KEGVITIQDG KTLFNELEVV EGMKLDRGYT SPYFITNQKT QKCELDDPLI LIHEKKISSI NSIVKVLELA LKRQRPLLIV SEDVESDALA TLILNKLRAG
301: IKVCAIKAPG FGENRKANLQ DLAALTGGEV ITDELGMNLE KVDLSMLGTC KKVTVSKDDT VILDGAGDKK GIEERCEQIR SAIELSTSDY DKEKLQERLA
401: KLSGGVAVLK IGGASEAEVG EKKDRVTDAL NATKAAVEEG ILPGGGVALL YAARELEKLP TANFDQKIGV QIIQNALKTP VYTIASNAGV EGAVIVGKLL
501: EQDNPDLGYD AAKGEYVDMV KAGIIDPLKV IRTALVDAAS VSSLLTTTEA VVVDLPKDES ESGAAGAGMG GMGGMDY

Arabidopsis Description

CPN60Chaperonin CPN60, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:P29197]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.