Factsheet for Bra001524.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 9

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002821.1-P
Bra028933.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G13860.1	Bra002821.1-P	AT5G56360.1	21798944
AT3G13860.1	Bra028933.1-P	AT5G56360.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX82514	Canola	mitochondrion	99.83	99.83
AT3G13860.1	Thale cress	mitochondrion	94.06	94.06
PGSC0003DMT400006642	Potato	cytosol	73.08	81.8
Solyc03g121640.2.1	Tomato	plastid	78.85	78.71
KRH47114	Soybean	mitochondrion	78.85	78.57
KRH44140	Soybean	mitochondrion	78.67	78.4
VIT_09s0002g02240.t01	Wine grape	mitochondrion	74.48	77.31
GSMUA_Achr7P24090_001	Banana	cytosol	68.71	74.15
Bra001934.1-P	Field mustard	mitochondrion	70.8	70.19
EES19881	Sorghum	mitochondrion	70.1	69.02
Zm00001d038857_P001	Maize	mitochondrion	69.93	68.97
TraesCS1D01G365800.1	Wheat	mitochondrion	69.58	68.86
Os05t0540300-01	Rice	mitochondrion	69.93	68.85
HORVU1Hr1G079910.1	Barley	mitochondrion, plasma membrane	69.76	68.67
TraesCS1A01G361400.1	Wheat	mitochondrion	69.41	68.57
TraesCS1B01G378000.1	Wheat	mitochondrion	69.58	68.27
Bra022931.1-P	Field mustard	mitochondrion	65.91	67.68
Bra005514.1-P	Field mustard	mitochondrion	65.21	66.73
Bra021836.1-P	Field mustard	cytosol	45.1	57.72
Bra001507.1-P	Field mustard	plastid	43.53	42.2
Bra028922.1-P	Field mustard	plastid	42.83	41.46
Bra000498.1-P	Field mustard	mitochondrion	38.29	40.93
Bra011919.1-P	Field mustard	plastid	42.13	39.64
Bra034383.1-P	Field mustard	plastid	40.21	39.32
Bra011985.1-P	Field mustard	plastid	40.21	39.32
Bra012462.1-P	Field mustard	plastid	39.86	37.56
Bra030858.1-P	Field mustard	cytosol	42.66	35.41
Bra023694.1-P	Field mustard	plastid	35.14	34.78
Bra027431.1-P	Field mustard	cytosol	27.62	30.44

Protein Annotations

Gene3D:1.10.560.10	MapMan:19.1.7.1	Gene3D:3.30.260.10	Gene3D:3.50.7.10	EnsemblPlantsGene:Bra001524	EnsemblPlants:Bra001524.1
EnsemblPlants:Bra001524.1-P	InterPro:Chaperonin_Cpn60_CS	InterPro:Chaprnin_Cpn60	ncoils:Coil	InterPro:Cpn60/TCP-1	GO:GO:0000166
GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0005773	GO:GO:0005774	GO:GO:0006457	GO:GO:0008150
GO:GO:0009987	GO:GO:0016020	GO:GO:0042026	GO:GO:0046686	InterPro:GROEL-like_equatorial_sf	InterPro:GroEL-like_apical_dom_sf
InterPro:IPR027409	InterPro:IPR027410	InterPro:IPR027413	UniProt:M4CBE4	HAMAP:MF_00600	PFAM:PF00118
PRINTS:PR00298	ScanProsite:PS00296	PANTHER:PTHR11353	PANTHER:PTHR11353:SF85	SUPFAM:SSF48592	SUPFAM:SSF52029
SUPFAM:SSF54849	InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02348	UniParc:UPI00025408FC	SEG:seg	:

Description

AT3G13860 (E=2e-295) HSP60-3A | HSP60-3A (HEAT SHOCK PROTEIN 60-3A); ATP binding / protein binding

Coordinates

chrA03:-:16848833..16852153

Molecular Weight (calculated)

60524.0 Da

IEP (calculated)

5.685

GRAVY (calculated)

-0.055

Length

572 amino acids

Sequence
(BLAST)

001: MYRVLSKLSS SIGSSTSRKL VSGRIISSRN YVAKDISFGV GARAAMLQGV SEVAEAVKVT MGPKGRNVII ESSYGAPKIT KDGVTVAKSI SFESNAKNMG
101: AELVKQVANA TNKVAGDGTT CATVLTQAIL TEGCKSVAAG VNVMDLRSGI NMAIDAVVSD LKSRAVMIST PEEITQVATI SANGEREIGE LIARAMEKVG
201: KEGVITVADG NTLENELEVV EGMKLARGYI SPYFITDEKT QKCELENPII LIHEKKVSDM NSLLKVLEAA VKSSRPLLVV AEDVESDALA MLILNKHHAG
301: LKVCAIKAPG FGDNRKASLD DLAVLTGAEV ISEERGLTLD KIRPELLGTA KKVTISRDDT LILHGGGDKK LIEERCEELR SANEKSTSTF DKEKTQERLS
401: KLSGGVAVFK VGGASEAEVG ERKDRVTDAL NATRAAVEEG IIPGGGVALL YATKALDNLE TQNEDQRRGV QIVQNALKAP ALTIAANAGY DGSLVVGKLL
501: EQDDCNFGFD ASKGSYVDMV KAGIIDPVKV IKTALTDAAS VSLLLTTTEA SVLVKAEEKT QKHVPDMAGM GM

Best Arabidopsis Sequence Match ( AT3G13860.1 )
(BLAST)

001: MYRVLSKLSS SIGSSTSRKL VSGRIISSRN YAAKDISFGI GARAAMLQGV SEVAEAVKVT MGPKGRNVII ESSYGGPKIT KDGVTVAKSI SFQAKAKNIG
101: AELVKQVASA TNKVAGDGTT CATVLTQAIL IEGCKSVAAG VNVMDLRVGI NMAIAAVVSD LKSRAVMIST PEEITQVATI SANGEREIGE LIARAMEKVG
201: KEGVITVADG NTLDNELEVV EGMKLARGYI SPYFITDEKT QKCELENPII LIHEKKISDI NSLLKVLEAA VKSSRPLLIV AEDVESDALA MLILNKHHGG
301: LKVCAIKAPG FGDNRKASLD DLAVLTGAEV ISEERGLSLE KIRPELLGTA KKVTVTRDDT IILHGGGDKK LIEERCEELR SANEKSTSTF DQEKTQERLS
401: KLSGGVAVFK VGGASESEVG ERKDRVTDAL NATRAAVEEG IIPGGGVALL YATKALDNLQ TENEDQRRGV QIVQNALKAP AFTIAANAGY DGSLVVGKLL
501: EQDDCNFGFD AAKGKYVDMV KAGIIDPVKV IRTALTDAAS VSLLLTTTEA SVLVKADENT PNHVPDMASM GM

Arabidopsis Description

HSP60-3AChaperonin CPN60-like 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q93ZM7]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.