Factsheet for GSMUA_Achr7P24090_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
mitochondrion 3
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr5P27690_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G13860.1	GSMUA_Achr10P...	AT5G56360.1	21798944
AT3G13860.1	GSMUA_Achr5P27690_001	AT5G56360.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400006642	Potato	cytosol	78.3	81.21
VIT_09s0002g02240.t01	Wine grape	mitochondrion	80.0	76.95
Solyc03g121640.2.1	Tomato	plastid	78.68	72.77
KRH47114	Soybean	mitochondrion	78.3	72.3
KRH44140	Soybean	mitochondrion	77.74	71.78
Zm00001d038857_P001	Maize	mitochondrion	76.23	69.66
AT3G13860.1	Thale cress	mitochondrion	74.72	69.23
EES19881	Sorghum	mitochondrion	75.85	69.19
Os05t0540300-01	Rice	mitochondrion	75.85	69.19
Bra001524.1-P	Field mustard	mitochondrion	74.15	68.71
CDX82514	Canola	mitochondrion	74.15	68.71
CDX75733	Canola	mitochondrion	73.77	68.36
TraesCS1D01G365800.1	Wheat	mitochondrion	74.34	68.17
HORVU1Hr1G079910.1	Barley	mitochondrion, plasma membrane	74.72	68.16
GSMUA_Achr10P...	Banana	mitochondrion	73.77	68.0
GSMUA_Achr1P11160_001	Banana	mitochondrion	74.15	67.99
TraesCS1A01G361400.1	Wheat	mitochondrion	73.96	67.7
TraesCS1B01G378000.1	Wheat	mitochondrion	73.96	67.24
GSMUA_Achr10P...	Banana	cytosol	13.96	53.62
GSMUA_AchrUn_...	Banana	plastid	42.08	38.65
GSMUA_Achr9P23240_001	Banana	plastid	44.15	38.24
GSMUA_Achr11P...	Banana	plastid	41.7	37.71
GSMUA_Achr3P27620_001	Banana	plastid	43.4	37.58
GSMUA_Achr9P18480_001	Banana	plastid	39.81	35.7
GSMUA_Achr11P...	Banana	plastid	43.58	33.19
GSMUA_Achr8P14600_001	Banana	plastid	13.96	28.14
GSMUA_Achr10P...	Banana	cytosol	38.68	16.72

Protein Annotations

Gene3D:1.10.560.10	MapMan:19.1.7.1	Gene3D:3.30.260.10	Gene3D:3.50.7.10	InterPro:Chaperonin_Cpn60_CS	InterPro:Chaprnin_Cpn60
InterPro:Cpn60/TCP-1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005773	GO:GO:0005774
GO:GO:0006457	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0042026	GO:GO:0046686
InterPro:GROEL-like_equatorial_sf	EnsemblPlantsGene:GSMUA_Achr7G24090_001	EnsemblPlants:GSMUA_Achr7P24090_001	EnsemblPlants:GSMUA_Achr7T24090_001	InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409
InterPro:IPR027410	InterPro:IPR027413	UniProt:M0TK95	PFAM:PF00118	PRINTS:PR00298	ScanProsite:PS00296
PANTHER:PTHR11353	PANTHER:PTHR11353:SF85	SUPFAM:SSF48592	SUPFAM:SSF52029	SUPFAM:SSF54849	InterPro:TCP-1-like_intermed_sf
TIGRFAMs:TIGR02348	UniParc:UPI000294E1D2	SEG:seg	:	:	:

Description

Chaperonin CPN60-like 2, mitochondrial [Source:GMGC_GENE;Acc:GSMUA_Achr7G24090_001]

Coordinates

chr7:-:26107532..26114719

Molecular Weight (calculated)

56521.6 Da

IEP (calculated)

5.447

GRAVY (calculated)

-0.054

Length

530 amino acids

Sequence
(BLAST)

001: MLQGVNELAE AVKVTMGPKG RTVIIEKSHG GVKVTKDGVT VAKSIEFKER SKNVGADLVK QVAKATNTAA GDGTTCATVL TQAILAEGCK SLASGVNVMD
101: LRHGINMAVD TIISHLKHRA WMISTPEEIT QVATISANNE REIGELIARA MERVGKDGVI TVSDGNTLDN EMEVVEGMKL GRGYISPYFI TDVKTQKCEL
201: ENPLILIHDK KISDMNSLVR ILELALKNHR ALLIVAEDLE SNALAMLLLN KHRAGIKVCA IKAPGFGENR RANLEDLAIL TGGEVITEDH GMNLQTVKVE
301: MLGTAKKVTV SLDDTIILHG GGDKKLIEER CEQLRTTMEK STAMFDKEKA QERLSKLSGG VAVLKIGGAS EAEVGEKKDR VTDALNAARA AVEEGILPGG
401: GVSLLYATKE LDKIQTSNSD ENIGVQIIKN ALKAPTLTIA GNAGVDGAVV VGKLLEQENL NLGYDAAKGE YVDMVEAGII DPLKVVRTAL VDAASVSVLL
501: TTTEAAVVEL PDAKSGPKVN RMAQMGDMDY

Best Arabidopsis Sequence Match ( AT3G13860.1 )
(BLAST)

001: MYRVLSKLSS SIGSSTSRKL VSGRIISSRN YAAKDISFGI GARAAMLQGV SEVAEAVKVT MGPKGRNVII ESSYGGPKIT KDGVTVAKSI SFQAKAKNIG
101: AELVKQVASA TNKVAGDGTT CATVLTQAIL IEGCKSVAAG VNVMDLRVGI NMAIAAVVSD LKSRAVMIST PEEITQVATI SANGEREIGE LIARAMEKVG
201: KEGVITVADG NTLDNELEVV EGMKLARGYI SPYFITDEKT QKCELENPII LIHEKKISDI NSLLKVLEAA VKSSRPLLIV AEDVESDALA MLILNKHHGG
301: LKVCAIKAPG FGDNRKASLD DLAVLTGAEV ISEERGLSLE KIRPELLGTA KKVTVTRDDT IILHGGGDKK LIEERCEELR SANEKSTSTF DQEKTQERLS
401: KLSGGVAVFK VGGASESEVG ERKDRVTDAL NATRAAVEEG IIPGGGVALL YATKALDNLQ TENEDQRRGV QIVQNALKAP AFTIAANAGY DGSLVVGKLL
501: EQDDCNFGFD AAKGKYVDMV KAGIIDPVKV IRTALTDAAS VSLLLTTTEA SVLVKADENT PNHVPDMASM GM

Arabidopsis Description

HSP60-3AChaperonin CPN60-like 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q93ZM7]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.