Factsheet for GSMUA_Achr9P18480_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os04t0443900-01	Rice	plastid	72.42	72.79
TraesCS2D01G310000.3	Wheat	plastid	71.4	72.01
VIT_01s0010g00920.t01	Wine grape	mitochondrion	73.43	71.15
Zm00001d028409_P001	Maize	plastid	70.73	71.09
TraesCS2B01G328500.3	Wheat	plastid	71.07	70.95
Solyc05g010240.2.1	Tomato	plastid	64.13	70.06
HORVU2Hr1G077410.18	Barley	plastid	70.22	69.87
PGSC0003DMT400064673	Potato	cytosol	52.45	68.74
KRH75202	Soybean	plastid	68.53	66.94
KRH71056	Soybean	plastid	68.19	66.61
Bra012462.1-P	Field mustard	plastid	67.68	65.9
CDY20555	Canola	plastid	67.51	65.73
CDY66193	Canola	plastid	67.34	65.57
TraesCS2A01G311700.1	Wheat	plastid	71.4	65.12
AT1G26230.1	Thale cress	plastid	66.84	64.65
GSMUA_Achr3P27620_001	Banana	plastid	62.27	60.13
GSMUA_Achr9P23240_001	Banana	plastid	61.93	59.8
GSMUA_Achr11P...	Banana	plastid	61.93	52.59
GSMUA_Achr8P14600_001	Banana	plastid	22.67	50.95
GSMUA_AchrUn_...	Banana	plastid	41.96	42.98
GSMUA_Achr11P...	Banana	plastid	42.3	42.66
GSMUA_Achr10P...	Banana	cytosol	9.48	40.58
GSMUA_Achr10P...	Banana	mitochondrion	39.26	40.35
GSMUA_Achr7P24090_001	Banana	cytosol	35.7	39.81
GSMUA_Achr1P11160_001	Banana	mitochondrion	38.92	39.79
GSMUA_Achr10P...	Banana	cytosol	38.41	18.52

Protein Annotations

MapMan:1.1.8.1.6.2.2	Gene3D:1.10.560.10	MapMan:1.2.1.2.1.2	MapMan:19.1.7.1	Gene3D:3.30.260.10	Gene3D:3.50.7.10
InterPro:Chaperonin_Cpn60_CS	InterPro:Chaprnin_Cpn60	InterPro:Cpn60/TCP-1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006457
GO:GO:0008150	GO:GO:0009507	GO:GO:0009536	GO:GO:0009570	GO:GO:0009941	GO:GO:0009987
GO:GO:0042026	InterPro:GROEL-like_equatorial_sf	EnsemblPlantsGene:GSMUA_Achr9G18480_001	EnsemblPlants:GSMUA_Achr9P18480_001	EnsemblPlants:GSMUA_Achr9T18480_001	InterPro:GroEL-like_apical_dom_sf
InterPro:IPR027409	InterPro:IPR027410	InterPro:IPR027413	UniProt:M0U1F5	PFAM:PF00118	PRINTS:PR00298
ScanProsite:PS00296	PANTHER:PTHR11353	PANTHER:PTHR11353:SF81	SUPFAM:SSF48592	SUPFAM:SSF52029	SUPFAM:SSF54849
InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02348	UniParc:UPI000296D232	SEG:seg	:	:

Description

RuBisCO large subunit-binding protein subunit beta, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr9G18480_001]

Coordinates

chr9:-:13050723..13057465

Molecular Weight (calculated)

63734.0 Da

IEP (calculated)

8.773

GRAVY (calculated)

-0.047

Length

591 amino acids

Sequence
(BLAST)

001: MAATSPTPLA APQLPFSPRR PPPRPISKEL HFNHDLSATK KLQAGVDLVA NLVGVTLGPK GRNVVLGNKY GPPRIVNDGE TVLKEVELED PLENVGVKLV
101: RQAGARTNDL AGDGCTTSII LAQGLISEGV KVLAAGMNPI QVARGIEKTA KALVSKLKLM SREIEDNEIA NVAAVSAGND HAVGSMIAEA VRRVGRKGVV
201: RIEDGRSTEN GLQIVEGMQF DRGYLSPYFV TNRADMLVEF NNCKILLIDK KITNAREMLK ILDGAVKENF PLLIVAEDFE PEALAPVIRN KLKGVLKAAA
301: IKAPSFGERK TDYLNDIAVL TGGTVIRDDM GLTLDTVGKE VLGSSVKVII GKDSTLIVTD GSTQHAVEKR VAQIRSLEQY SEEKFQKKIL NERIARLCGG
401: IAIIQVGAQT VVELKDKKLR IEDSLNATKA AIEEGVVVGG GCTLLRLSTM VDGIKDYLDN EEQKIGADIF KRALSYPAKL IAKNAGVNGD VIVNKVLSND
501: DIRYGYNAAM NCYEDLVAAG ILDPSKVVRC CLEHAAATAK TFLTSDLVVV DVKGTETISM RMPPRRPMPM SNMMQPPLPA SKFMRMPGIA L

Best Arabidopsis Sequence Match ( AT1G26230.1 )
(BLAST)

001: MAFSQAALSA LPLSDRTFRK KPSSSSSSSP NFVLRVRAAA KEVHFNRDGS VTKKLQAGAD MVAKLLGVTL GPKGRNVVLQ NKYGPPRIVN DGETVLKEIE
101: LEDPLENVGV KLVRQAGAKT NDLAGDGSTT SIILAHGLIT EGIKVISAGT NPIQVARGIE KTTKALVLEL KSMSREIEDH ELAHVAAVSA GNDYEVGNMI
201: SNAFQQVGRT GVVTIEKGKY LVNNLEIVEG MQFNRGYLSP YFVTDRRKRE AEFHDCKLLL VDKKITNPKD MFKILDSAVK EEFPVLIVAE DIEQDALAPV
301: IRNKLKGNLK VAAIKAPAFG ERKSHCLDDL AIFTGATVIR DEMGLSLEKA GKEVLGTAKR VLVTKDSTLI VTNGFTQKAV DERVSQIKNL IENTEENFQK
401: KILNERVARL SGGIAIIQVG ALTQVELKDK QLKVEDALNA TKSAIEEGIV VGGGCALLRL ATKVDRIKET LDNTEQKIGA EIFKKALSYP IRLIAKNADT
501: NGNIVIEKVL SNKNTMYGYN AAKNQYEDLM LAGIIDPTKV VRCCLEHASS VAQTFLTSDC VVVEIKEIKP RPIINPPLPT SSPATSSMFP DRKLPRFPQI
601: MPRTRSHFPR K

Arabidopsis Description

CPN60B4Cpn60beta4 [Source:UniProtKB/TrEMBL;Acc:A0A178WH16]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.